Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A24
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-4|CAA16407.1|  386|Caenorhabditis elegans Hypothetical ...    54   4e-08
Z70750-3|CAA94738.1|  374|Caenorhabditis elegans Hypothetical pr...    41   6e-04
U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical p...    40   8e-04
AL021497-1|CAA16404.1|  382|Caenorhabditis elegans Hypothetical ...    40   0.001
AL110477-10|CAB54334.1|  328|Caenorhabditis elegans Hypothetical...    35   0.029
AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical ...    29   1.9  
U23484-15|AAC46762.1|  299|Caenorhabditis elegans Hypothetical p...    27   5.8  
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    27   5.8  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   5.8  
AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical p...    27   7.6  
AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AL021497-4|CAA16407.1|  386|Caenorhabditis elegans Hypothetical
           protein Y51A2D.8 protein.
          Length = 386

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
 Frame = +3

Query: 87  FEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPY----TTFGINKFADYTPEE 254
           FE F K++NR+YKD+++ +  + +F K    +++LN K+      T FGINKF+D +  E
Sbjct: 43  FEDFKKKYNRKYKDESENQQRFNNFVKSYNNVDKLNAKSKAAGYDTQFGINKFSDLSTAE 102

Query: 255 QQSRLGLRLPAKKT 296
              RL   +P+  T
Sbjct: 103 FHGRLSNVVPSNNT 116


>Z70750-3|CAA94738.1|  374|Caenorhabditis elegans Hypothetical
           protein C50F4.3 protein.
          Length = 374

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
 Frame = +3

Query: 87  FEIFVKEHNREYKDDADRELHYQSF---KKHLAEINQLNEKNPY-TTFGINKFADYTPEE 254
           FE F+ ++ R YKD+ +++  +Q F      + ++N+  +K  + T +GINKF+D + +E
Sbjct: 47  FEDFIVKYKRNYKDEIEKKFRFQQFVATHNRVGKMNKAAKKAGHDTKYGINKFSDLSKKE 106


>U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical
           protein R09F10.1 protein.
          Length = 383

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +3

Query: 78  KELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFADYTPEEQ 257
           +++F  F+ + +R+Y    + E  YQ F +++ E     E+N      +N+F D+T EE 
Sbjct: 79  EQMFNDFILKFDRKYTSVEEFEYRYQIFLRNVIEFEAEEERNLGLDLDVNEFTDWTDEEL 138

Query: 258 Q 260
           Q
Sbjct: 139 Q 139


>AL021497-1|CAA16404.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2D.1 protein.
          Length = 382

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +3

Query: 87  FEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEK----NPYTTFGINKFADYTPEE 254
           F  F K+ +R YK +A+ +L  Q+F K    + +LN+        + F +N+F+D T  E
Sbjct: 44  FVEFKKKFSRTYKSEAENQLRLQNFVKSRNNVVRLNKNAQKAGRNSNFAVNQFSDLTTSE 103

Query: 255 QQSRLGLRLPAKKT 296
              RL  R P   T
Sbjct: 104 LHQRLS-RFPPNLT 116


>AL110477-10|CAB54334.1|  328|Caenorhabditis elegans Hypothetical
           protein Y113G7B.15 protein.
          Length = 328

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +3

Query: 108 HNREYKDDADRELHYQSFKKHLAEINQLNEK----NPYTTFGINKFADYTPEEQQSR 266
           H + Y+  A+++     F K+  +I +LN K        TFG NKFAD   +E  +R
Sbjct: 3   HKKHYRTPAEKDRRLAHFAKNHQKIQELNAKARREGRNVTFGWNKFADKNRQELSAR 59


>AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical
           protein E01A2.2a protein.
          Length = 712

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
 Frame = +3

Query: 60  YDLNQAKELFEIFVKEHNRE------YK-DDAD--RELHYQSFKKHLAEINQLNEKNPYT 212
           Y     K   E F + H  E      YK DDA   RE H ++ +K L   N+L E+  + 
Sbjct: 110 YKTEHRKHQLERFFRAHKDEEWFRLKYKPDDAKKLREAHLENVQKRLQVFNELKEQGQFN 169

Query: 213 TFGINKFAD 239
            F ++ F D
Sbjct: 170 KFSLD-FGD 177


>U23484-15|AAC46762.1|  299|Caenorhabditis elegans Hypothetical
           protein EEED8.2 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 108 HNREYKDDADRELHYQSFKKHLAEINQLNEKN 203
           H R +K  A  E+HY +F   L E+  + EKN
Sbjct: 199 HERSWKPRAREEIHYFNFPNSLGELYSV-EKN 229


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 120 YKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFADYTPEEQQ 260
           + DDA         ++ L+ +++  E    TTFG+ K     PE+++
Sbjct: 278 FSDDATYVASDILEERSLSTVHEFGESEASTTFGVGKLVTKKPEKEE 324


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 120  YKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFADYTPEEQQ 260
            + DDA         ++ L+ +++  E    TTFG+ K     PE+++
Sbjct: 5124 FSDDATYVASDILEERSLSTVHEFGESEASTTFGVGKLVTKKPEKEE 5170


>AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical
           protein F40A3.7 protein.
          Length = 409

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
 Frame = -2

Query: 229 LLMPNVV--YGFFSFNWF 182
           LL PN++  Y FF+FNW+
Sbjct: 75  LLFPNILANYSFFTFNWY 92


>Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +3

Query: 93  IFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFADYTPEEQQSR 266
           I +KEH    +  +  EL++  + K     N  N   P+  FG  +  +Y   E+  R
Sbjct: 537 IMLKEHFLVNEKPSTFELNFNRYAKTSEISNDTNNVEPHEVFGETEHVEYKNGEELYR 594


>AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +3

Query: 93  IFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFADYTPEEQQSR 266
           I +KEH    +  +  EL++  + K     N  N   P+  FG  +  +Y   E+  R
Sbjct: 537 IMLKEHFLVNEKPSTFELNFNRYAKTSEISNDTNNVEPHEVFGETEHVEYKNGEELYR 594


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,871,673
Number of Sequences: 27780
Number of extensions: 167693
Number of successful extensions: 550
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)