Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_A22
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 165 3e-41
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 159 2e-39
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 155 3e-38
09_02_0622 - 11310941-11311472,11312776-11312813,11312875-113129... 30 2.3
04_01_0039 + 455760-457631 30 2.3
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 29 3.0
01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847 29 3.0
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 3.0
06_01_0601 + 4337575-4340149,4340566-4340978 29 5.3
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 29 5.3
09_04_0757 - 19963832-19964866 28 7.0
08_02_0851 - 21866088-21866210,21866311-21866413,21866531-218667... 28 9.3
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888... 28 9.3
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 165 bits (401), Expect = 3e-41
Identities = 84/195 (43%), Positives = 123/195 (63%), Gaps = 1/195 (0%)
Frame = +3
Query: 177 VQESIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHIR 356
V + I ++ ++ +++ G P LA++ VG R+DS Y+R K KA E +GI + +
Sbjct: 88 VAKQIREEIAVEIAKMKDA-IGVVPGLAVILVGSRKDSQTYVRNKKKACEAVGIKSYEVN 146
Query: 357 LPRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 536
LP D +E E+L I + N PSVHGI+VQ+PL H ++ + +AVS +KDVDG + +N
Sbjct: 147 LPEDSSEDEVLKHIATFNSDPSVHGILVQLPL--PHHMNDENILNAVSIEKDVDGFHPLN 204
Query: 537 EGRVAV-GDLSGFIPCTPAGCVELIKKTGVTIAGKNVVXLGRSRIVGTPVSELLKWEHAT 713
GR+A+ G F+PCTP GC+EL+ + GV I GK V +GRS IVG P + LL+ +AT
Sbjct: 205 IGRLAMQGRDPFFVPCTPKGCMELLHRYGVEIKGKRAVVIGRSNIVGMPAALLLQKANAT 264
Query: 714 VTVCHSKTXNLSEIT 758
V++ HS T EIT
Sbjct: 265 VSIVHSNTKKPEEIT 279
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 159 bits (386), Expect = 2e-39
Identities = 85/196 (43%), Positives = 124/196 (63%), Gaps = 1/196 (0%)
Frame = +3
Query: 171 EAVQESIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEH 350
+AV I ++ V L S + P LA+V VG R+DS Y++MK KA ++GI +
Sbjct: 8 KAVAADIRREVAADVAALSSAHN-LVPGLAVVIVGSRKDSQTYVQMKRKACAEVGIRSVD 66
Query: 351 IRLPRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNT 530
+ L DI+E L+A++ LN P+VHGI+VQ+PL I+ ++ + +S +KDVDG +
Sbjct: 67 VDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKH--INEEKILNEISLEKDVDGFHP 124
Query: 531 INEGRVAV-GDLSGFIPCTPAGCVELIKKTGVTIAGKNVVXLGRSRIVGTPVSELLKWEH 707
+N G++A+ G F+PCTP GC+EL+ ++GVTI GK V +GRS IVG PVS LL
Sbjct: 125 LNIGKLAMKGRDPLFLPCTPKGCMELLTRSGVTINGKRAVVVGRSNIVGLPVSLLLLKAD 184
Query: 708 ATVTVCHSKTXNLSEI 755
ATV++ HS+T N I
Sbjct: 185 ATVSIVHSRTPNPESI 200
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 155 bits (377), Expect = 3e-38
Identities = 78/197 (39%), Positives = 123/197 (62%), Gaps = 1/197 (0%)
Frame = +3
Query: 171 EAVQESIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEH 350
++V E I + ++V ++++ G P LA+V VG R DS Y+R K+K E++GI +
Sbjct: 104 KSVAEDIRFQIAEEVRQMKNA-VGHVPGLAVVLVGDRRDSESYVRYKIKGCEEVGIKSLL 162
Query: 351 IRLPRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNT 530
LP + TE ++ ++ NE PSVHGI+VQ+PL +D R+ A+S +KDVDG +
Sbjct: 163 AELPGNCTEDVVVDSVSRFNEDPSVHGILVQLPLPQH--MDEERILSAISLEKDVDGFHP 220
Query: 531 INEGRVAVGDLSG-FIPCTPAGCVELIKKTGVTIAGKNVVXLGRSRIVGTPVSELLKWEH 707
+N G +A+ F+PC C+EL+ ++G+ + GK+V +GRS++VG P S LL+ H
Sbjct: 221 LNVGNLALRSRKPLFVPCAAKACLELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQRHH 280
Query: 708 ATVTVCHSKTXNLSEIT 758
ATV++ H+ T N EIT
Sbjct: 281 ATVSIIHAFTTNPEEIT 297
>09_02_0622 -
11310941-11311472,11312776-11312813,11312875-11312926,
11313891-11314270
Length = 333
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 345 EHIRLPRDITEIELLAKITSLNESPSVHGIIV-QMPLDSDHA 467
+HIR+PRD+ + TS++ + +VH V Q+P ++ A
Sbjct: 192 DHIRVPRDVLRTAITTSATSVHLNITVHAASVGQLPPPTERA 233
>04_01_0039 + 455760-457631
Length = 623
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 396 ITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVS-PDKDVDGLNTINEGRVAVGDLSG 569
++ LNE P+++G +V + DSD ++ + DAV+ P +D + G LSG
Sbjct: 469 VSRLNEKPTINGTLVDITCDSDGKVEKF-IRDAVTLPLHPLDDAAAEHGGYYVAALLSG 526
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 278 PAHLHDGKPGLEARPF*T--QPRHLLTQVIFYRFLHSFQFFRILPHTRDSQYLYH 120
PA +DG L + + Q +H L +V++ F+HSF HT++++ +H
Sbjct: 50 PARYYDGYSKLRTWAYSSLDQYKHELLRVLYPVFIHSFMDLVAEGHTQEARSFFH 104
>01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847
Length = 943
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 354 RLPRDITEIELLAKITSLNES---PSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGL 524
RLPR + ++ LA ++ + P + G++ +P + ++R+ V P +
Sbjct: 86 RLPRALLRLDALASLSLPRNNLSGPVLPGLLAALPRLRSLDLSSNRLAAPV-PAELFAQC 144
Query: 525 NTINEGRVAVGDLSGFIPCTPAGCVELI 608
+I +A +LSG+IP C L+
Sbjct: 145 RSIRALSLARNELSGYIPPAVTSCASLV 172
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 135 RITSMWKNSEELEAVQESIENDL 203
RI+ M KN+E+LE V +++NDL
Sbjct: 496 RISIMHKNNEDLELVNSNLQNDL 518
>06_01_0601 + 4337575-4340149,4340566-4340978
Length = 995
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 546 VAVGDLSGFIPCTPAGCV--ELIKKTGVTIAGKNVVXLGR 659
+++ +LSG IP T AGCV E I +G ++ G +G+
Sbjct: 471 LSMNNLSGAIPATIAGCVALEYINLSGNSLQGSLPTSIGK 510
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 78 SCSRNRRICFYCCIVIKILRITSMWKNSEELEAVQESIENDL---RQQVTRLRSKWSG 242
+CS++ IC CC +K L + + E + ++E+I R+ + RL +K G
Sbjct: 86 ACSKDLGICAKCCTCVKALVGRDLSEQESERKELEEAIRGARERERRTLLRLMNKGGG 143
>09_04_0757 - 19963832-19964866
Length = 344
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/69 (36%), Positives = 31/69 (44%)
Frame = -1
Query: 688 SDTGVPTMRLRPSXTTFLPAIVTPVFLISSTHPAGVQGMNPDRSPTATRPSLIVFKPSTS 509
S GVP RLRP T VFLI + V M+ P A++PS V +P +
Sbjct: 11 SSGGVPA-RLRPHLTRLT------VFLIVFSAGYSVGIMSSSIRPPASKPSQTVIRPRAA 63
Query: 508 LSGETASVT 482
TAS T
Sbjct: 64 HLSGTASST 72
>08_02_0851 -
21866088-21866210,21866311-21866413,21866531-21866744,
21866877-21867075,21867171-21868151
Length = 539
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -3
Query: 218 RHLLTQVIFYRFLHSFQFFRILPHTRDSQYLYHDTTVKTNSPVP 87
+++ QV+FY+ LH F +P + L D K + +P
Sbjct: 494 QYVAKQVVFYKRLHKIFFVDAIPKAPSGKILRKDLRAKLAAGIP 537
>06_01_1084 +
8883301-8883515,8883736-8884063,8884764-8885022,
8885581-8885681
Length = 300
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 189 IENDLRQQVT--RLRSKWSGFEPRLAIVQVGG 278
I+NDL Q++T R+ S+W G + A VGG
Sbjct: 160 IDNDLAQRLTGTRMESRWRGRRSKGASTGVGG 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,640,942
Number of Sequences: 37544
Number of extensions: 392157
Number of successful extensions: 1129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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