Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A20
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...   101   1e-22
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.15 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.4  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   4.2  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   5.6  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    25   9.7  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score =  101 bits (242), Expect = 1e-22
 Identities = 54/124 (43%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
 Frame = +3

Query: 447 MFGAIGIVTLLASVAYFELRYREISWRDFVNLYLNKGVVEKLEVINKKWVRVKLQGNALE 626
           + G I +  +L +V       +EI+W+DF   +L+KG+VE+L V+N+  VRV L+G    
Sbjct: 136 ILGGILVAYILYNVLSPNANMQEITWQDFRQQFLDKGLVERLVVVNRNMVRVILRGGVAS 195

Query: 627 GK-VIWFAIGSVDSFERNLXNAQIEMSIDPPNFVPVIYKTEVXA-ASLTGMLPTLLIIGF 800
           G    +F+IGS+DSF+R L +AQ ++ I P  FVPV Y  EV   A+L    PTLLIIG 
Sbjct: 196 GSGQYYFSIGSIDSFDRKLEDAQRQLGIPPSEFVPVAYHDEVSVLATLLSFAPTLLIIGS 255

Query: 801 XIYM 812
            IY+
Sbjct: 256 VIYL 259


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 27/94 (28%), Positives = 42/94 (44%)
 Frame = -3

Query: 748 TSVL*ITGTKLGGSMLISICAFXRLRSNESTLPIANQITFPSNAFP*SFTRTHFLLITSS 569
           TSV   T T    + L S+ +     ++ + L  AN  T  S +       T  +L TSS
Sbjct: 360 TSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSS 419

Query: 568 FSTTPLFKYKLTKSLQLISLYLNSKYATEASNVT 467
            S+TPL     T +    S  L+S  +T A++ +
Sbjct: 420 VSSTPLSSANSTTATSASSTPLSSVNSTTATSAS 453



 Score = 31.1 bits (67), Expect = 0.20
 Identities = 27/94 (28%), Positives = 41/94 (43%)
 Frame = -3

Query: 748 TSVL*ITGTKLGGSMLISICAFXRLRSNESTLPIANQITFPSNAFP*SFTRTHFLLITSS 569
           TSV   T T    + L S+ +     ++ + L  AN  T  S +       T  +L TSS
Sbjct: 474 TSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSS 533

Query: 568 FSTTPLFKYKLTKSLQLISLYLNSKYATEASNVT 467
            S+TPL     T +    S  L S  +T A++ +
Sbjct: 534 VSSTPLSSANSTTATSASSTPLTSVNSTTATSAS 567


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 250 RVAVRKTLKLRKKMQVLHLKVPRLHRNRPLHHQINGT 360
           RV+ +K LK    M  LH+  P+ H NR L  Q+  T
Sbjct: 467 RVSYQKLLKSHV-MNKLHMAHPKSHTNRSLLRQLKNT 502


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 657 VDSFERNLXNAQIEMSIDPPNFVPVIYKTEVXAASLTGMLPTL 785
           +DS   NL NA   + +DP + V  + K ++  AS  G+L  L
Sbjct: 365 IDSKNENLINATSLLGVDPSSLVKWLTKRKIKMAS-EGILKPL 406


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 238 NTSNRVAV--RKTLKLRKKMQVLHLKVPRLHRNRPLHHQING 357
           N++NRV +  +K  +L       H K+ + HRNR  H+  NG
Sbjct: 289 NSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNG 330


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 426 QDKEKWMMFGAIGIVTLLASVAYFELRYREISW 524
           QDK +W++     I+T+L     F+++   + W
Sbjct: 102 QDKSRWVLLIIWSIITILTIDKKFKIKESYLEW 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,254
Number of Sequences: 5004
Number of extensions: 53985
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)