Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_A20
(816 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC065016-1|AAH65016.1| 797|Homo sapiens AFG3 ATPase family gene... 126 1e-28
BC024282-1|AAH24282.1| 812|Homo sapiens Similar to AFG3 ATPase ... 126 1e-28
Y18314-1|CAB48398.1| 797|Homo sapiens paraplegin-like protein p... 123 7e-28
AK097044-1|BAC04933.1| 199|Homo sapiens protein ( Homo sapiens ... 48 5e-05
BC045753-1|AAH45753.1| 125|Homo sapiens AFG3L1 protein protein. 46 2e-04
Y16610-1|CAA76314.1| 795|Homo sapiens paraplegin protein. 42 0.003
BC036104-1|AAH36104.1| 795|Homo sapiens spastic paraplegia 7 (p... 42 0.003
BC035929-1|AAH35929.1| 732|Homo sapiens SPG7 protein protein. 42 0.003
AF080525-1|AAD28099.1| 795|Homo sapiens paraplegin protein. 42 0.003
BC105104-1|AAI05105.1| 597|Homo sapiens unc-93 homolog B1 (C. e... 31 6.6
BC101568-1|AAI01569.1| 597|Homo sapiens unc-93 homolog B1 (C. e... 31 6.6
BC092472-1|AAH92472.1| 597|Homo sapiens unc-93 homolog B1 (C. e... 31 6.6
BC025669-1|AAH25669.1| 505|Homo sapiens UNC93B1 protein protein. 31 6.6
AJ422142-1|CAD19522.1| 497|Homo sapiens UNC-93B protein protein. 31 6.6
AJ271326-1|CAC19791.1| 597|Homo sapiens unc-93 related protein ... 31 6.6
BC033623-1|AAH33623.1| 505|Homo sapiens UNC93B1 protein protein. 30 8.7
>BC065016-1|AAH65016.1| 797|Homo sapiens AFG3 ATPase family gene
3-like 2 (yeast) protein.
Length = 797
Score = 126 bits (304), Expect = 1e-28
Identities = 76/217 (35%), Positives = 108/217 (49%), Gaps = 6/217 (2%)
Frame = +3
Query: 177 LDSVLRQWYEFCKKPPKGFEKYFQPG-SGQKDAKTQEKNXXXXXXXXXXXXXXXXXXXDK 353
L ++ + FC +PPKGFEKYF G +G+K ++ +E
Sbjct: 55 LTDIIAAYQRFCSRPPKGFEKYFPNGKNGKKASEPKEVMGEKKESKPAATTRSSGGGGGG 114
Query: 354 WNMNMFXXXXXXXXXXXXXXXYEGQDKEKWMMFGAIGIVTLLASVAYFELRYR---EISW 524
DK+ M F + V ++ L R EI+W
Sbjct: 115 GGKRGGKKDDSHWWSRFQKGDIPWDDKDFRMFF--LWTALFWGGVMFYLLLKRSGREITW 172
Query: 525 RDFVNLYLNKGVVEKLEVINKKWVRVKLQGNA--LEGKVIWFAIGSVDSFERNLXNAQIE 698
+DFVN YL+KGVV++LEV+NK++VRV ++G+ +WF IGSVD+FERNL Q E
Sbjct: 173 KDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLETLQQE 232
Query: 699 MSIDPPNFVPVIYKTEVXAASLTGMLPTLLIIGFXIY 809
+ I+ N VPV+Y E + L MLPT+LII F +Y
Sbjct: 233 LGIEGENRVPVVYIAESDGSFLLSMLPTVLIIAFLLY 269
>BC024282-1|AAH24282.1| 812|Homo sapiens Similar to AFG3 ATPase
family gene 3-like 2 (yeast) protein.
Length = 812
Score = 126 bits (304), Expect = 1e-28
Identities = 76/217 (35%), Positives = 108/217 (49%), Gaps = 6/217 (2%)
Frame = +3
Query: 177 LDSVLRQWYEFCKKPPKGFEKYFQPG-SGQKDAKTQEKNXXXXXXXXXXXXXXXXXXXDK 353
L ++ + FC +PPKGFEKYF G +G+K ++ +E
Sbjct: 70 LTDIIAAYQRFCSRPPKGFEKYFPNGKNGKKASEPKEVMGEKKESKPAATTRSSGGGGGG 129
Query: 354 WNMNMFXXXXXXXXXXXXXXXYEGQDKEKWMMFGAIGIVTLLASVAYFELRYR---EISW 524
DK+ M F + V ++ L R EI+W
Sbjct: 130 GGKRGGKKDDSHWWSRFQKGDIPWDDKDFRMFF--LWTALFWGGVMFYLLLKRSGREITW 187
Query: 525 RDFVNLYLNKGVVEKLEVINKKWVRVKLQGNA--LEGKVIWFAIGSVDSFERNLXNAQIE 698
+DFVN YL+KGVV++LEV+NK++VRV ++G+ +WF IGSVD+FERNL Q E
Sbjct: 188 KDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLETLQQE 247
Query: 699 MSIDPPNFVPVIYKTEVXAASLTGMLPTLLIIGFXIY 809
+ I+ N VPV+Y E + L MLPT+LII F +Y
Sbjct: 248 LGIEGENRVPVVYIAESDGSFLLSMLPTVLIIAFLLY 284
>Y18314-1|CAB48398.1| 797|Homo sapiens paraplegin-like protein
protein.
Length = 797
Score = 123 bits (297), Expect = 7e-28
Identities = 75/217 (34%), Positives = 107/217 (49%), Gaps = 6/217 (2%)
Frame = +3
Query: 177 LDSVLRQWYEFCKKPPKGFEKYFQPG-SGQKDAKTQEKNXXXXXXXXXXXXXXXXXXXDK 353
L ++ + FC +PPKGF KYF G +G+K ++ +E
Sbjct: 55 LTDIIAAYQRFCSRPPKGFGKYFPNGKNGKKASEPKEVMGEKKESKPAATTRSSGGGGGG 114
Query: 354 WNMNMFXXXXXXXXXXXXXXXYEGQDKEKWMMFGAIGIVTLLASVAYFELRYR---EISW 524
DK+ M F + V ++ L R EI+W
Sbjct: 115 GGKRGGKKDDSHWWSRFQKGDIPWDDKDFRMFF--LWTALFWGGVMFYLLLKRSGREITW 172
Query: 525 RDFVNLYLNKGVVEKLEVINKKWVRVKLQGNA--LEGKVIWFAIGSVDSFERNLXNAQIE 698
+DFVN YL+KGVV++LEV+NK++VRV ++G+ +WF IGSVD+FERNL Q E
Sbjct: 173 KDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLETLQQE 232
Query: 699 MSIDPPNFVPVIYKTEVXAASLTGMLPTLLIIGFXIY 809
+ I+ N VPV+Y E + L MLPT+LII F +Y
Sbjct: 233 LGIEGENRVPVVYIAESDGSFLLSMLPTVLIIAFLLY 269
>AK097044-1|BAC04933.1| 199|Homo sapiens protein ( Homo sapiens
cDNA FLJ39725 fis, clone SMINT2015294, highly similar to
Mus musculus ATP-dependent zinc metalloprotease (Afg3l1)
mRNA. ).
Length = 199
Score = 47.6 bits (108), Expect = 5e-05
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +3
Query: 492 YFELRYREISWRDFVNLYLNKGVVEKLEVINKKWVRV-KLQGNALEGKVI 638
YF REI+W+ FV YL +G+V++LEV+NK+ VRV G + EG ++
Sbjct: 54 YFRDPGREITWKHFVQYYLARGLVDRLEVVNKQSVRVIPAPGTSSEGAML 103
>BC045753-1|AAH45753.1| 125|Homo sapiens AFG3L1 protein protein.
Length = 125
Score = 46.0 bits (104), Expect = 2e-04
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +3
Query: 492 YFELRYREISWRDFVNLYLNKGVVEKLEVINKKWVRV 602
YF REI+W+ FV YL +G+V++LEV+NK+ VRV
Sbjct: 54 YFRDPGREITWKHFVQYYLARGLVDRLEVVNKQSVRV 90
>Y16610-1|CAA76314.1| 795|Homo sapiens paraplegin protein.
Length = 795
Score = 41.9 bits (94), Expect = 0.003
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Frame = +3
Query: 516 ISWRDFVNLYLNKGVVEKLEVINKK-WVRVKLQ-GNALEGK-----VIWFAIGSVDSFER 674
ISW DFV+ L KG V++++V+ + V V L G + G+ + + ++D FE
Sbjct: 165 ISWNDFVHEMLAKGEVQRVQVVPESDVVEVYLHPGAVVFGRPRLALMYRMQVANIDKFEE 224
Query: 675 NLXNAQIEMSIDPPNFVPVIYK 740
L A+ E++I+ + +PV YK
Sbjct: 225 KLRAAEDELNIEAKDRIPVSYK 246
>BC036104-1|AAH36104.1| 795|Homo sapiens spastic paraplegia 7 (pure
and complicated autosomal recessive) protein.
Length = 795
Score = 41.9 bits (94), Expect = 0.003
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Frame = +3
Query: 516 ISWRDFVNLYLNKGVVEKLEVINKK-WVRVKLQ-GNALEGK-----VIWFAIGSVDSFER 674
ISW DFV+ L KG V++++V+ + V V L G + G+ + + ++D FE
Sbjct: 165 ISWNDFVHEMLAKGEVQRVQVVPESDVVEVYLHPGAVVFGRPRLALMYRMQVANIDKFEE 224
Query: 675 NLXNAQIEMSIDPPNFVPVIYK 740
L A+ E++I+ + +PV YK
Sbjct: 225 KLRAAEDELNIEAKDRIPVSYK 246
>BC035929-1|AAH35929.1| 732|Homo sapiens SPG7 protein protein.
Length = 732
Score = 41.9 bits (94), Expect = 0.003
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Frame = +3
Query: 516 ISWRDFVNLYLNKGVVEKLEVINKK-WVRVKLQ-GNALEGK-----VIWFAIGSVDSFER 674
ISW DFV+ L KG V++++V+ + V V L G + G+ + + ++D FE
Sbjct: 102 ISWNDFVHEMLAKGEVQRVQVVPESDVVEVYLHPGAVVFGRPRLALMYRMQVANIDKFEE 161
Query: 675 NLXNAQIEMSIDPPNFVPVIYK 740
L A+ E++I+ + +PV YK
Sbjct: 162 KLRAAEDELNIEAKDRIPVSYK 183
>AF080525-1|AAD28099.1| 795|Homo sapiens paraplegin protein.
Length = 795
Score = 41.9 bits (94), Expect = 0.003
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Frame = +3
Query: 516 ISWRDFVNLYLNKGVVEKLEVINKK-WVRVKLQ-GNALEGK-----VIWFAIGSVDSFER 674
ISW DFV+ L KG V++++V+ + V V L G + G+ + + ++D FE
Sbjct: 165 ISWNDFVHEMLAKGEVQRVQVVPESDVVEVYLHPGAVVFGRPRLALMYRMQVANIDKFEE 224
Query: 675 NLXNAQIEMSIDPPNFVPVIYK 740
L A+ E++I+ + +PV YK
Sbjct: 225 KLRAAEDELNIEAKDRIPVSYK 246
>BC105104-1|AAI05105.1| 597|Homo sapiens unc-93 homolog B1 (C.
elegans) protein.
Length = 597
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 438 KWMMFGAIGIVTLLASVAYFELRY 509
KWMMF A+GI L S Y+E Y
Sbjct: 136 KWMMFLAVGIYALFVSTNYWERYY 159
>BC101568-1|AAI01569.1| 597|Homo sapiens unc-93 homolog B1 (C.
elegans) protein.
Length = 597
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 438 KWMMFGAIGIVTLLASVAYFELRY 509
KWMMF A+GI L S Y+E Y
Sbjct: 136 KWMMFLAVGIYALFVSTNYWERYY 159
>BC092472-1|AAH92472.1| 597|Homo sapiens unc-93 homolog B1 (C.
elegans) protein.
Length = 597
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 438 KWMMFGAIGIVTLLASVAYFELRY 509
KWMMF A+GI L S Y+E Y
Sbjct: 136 KWMMFLAVGIYALFVSTNYWERYY 159
>BC025669-1|AAH25669.1| 505|Homo sapiens UNC93B1 protein protein.
Length = 505
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 438 KWMMFGAIGIVTLLASVAYFELRY 509
KWMMF A+GI L S Y+E Y
Sbjct: 136 KWMMFLAVGIYALFVSTNYWERYY 159
>AJ422142-1|CAD19522.1| 497|Homo sapiens UNC-93B protein protein.
Length = 497
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 438 KWMMFGAIGIVTLLASVAYFELRY 509
KWMMF A+GI L S Y+E Y
Sbjct: 136 KWMMFLAVGIYALFVSTNYWERYY 159
>AJ271326-1|CAC19791.1| 597|Homo sapiens unc-93 related protein
protein.
Length = 597
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 438 KWMMFGAIGIVTLLASVAYFELRY 509
KWMMF A+GI L S Y+E Y
Sbjct: 136 KWMMFLAVGIYALFVSTNYWERYY 159
>BC033623-1|AAH33623.1| 505|Homo sapiens UNC93B1 protein protein.
Length = 505
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 438 KWMMFGAIGIVTLLASVAYFELRYREI 518
KWMMF A+GI L S Y+E RY +
Sbjct: 136 KWMMFLAVGIYALFVSTNYWE-RYHTL 161
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,679,099
Number of Sequences: 237096
Number of extensions: 1782108
Number of successful extensions: 3428
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3421
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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