Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A19
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    29   0.34 
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    28   0.78 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   1.4  
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    25   7.3  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   7.3  

>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = +1

Query: 196 KVICVYNKQRVGFIGDRVMVAIKGQKKKGILVGLKQTQKV---KVPKFDSNNIVLIDDNG 366
           +V+ V  K R G          +G     I+V  K   +    +  +FD N  VL++   
Sbjct: 36  EVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVLVNKEC 95

Query: 367 TPLGTRIHVPIPTILRT 417
            PLGTRI   +   LRT
Sbjct: 96  EPLGTRILSVVANELRT 112


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 225 CRFYW*QSNGSYQRAKEERHS 287
           C+ YW QSNG Y   K +RH+
Sbjct: 409 CKLYW-QSNGDYLCVKVDRHT 428


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +1

Query: 205 CVYNKQRVGFIGD 243
           CVY KQRV FIGD
Sbjct: 145 CVYLKQRVSFIGD 157


>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 285 NAFLLLPFDSYHYSVTNKTDTLFVVYTNYFR 193
           N  L + +  Y +  TN+T   F  Y +YFR
Sbjct: 9   NKLLTISYLLYRFPNTNQTKHCFQSYIDYFR 39


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 312 LLCLLETYKNAFLLLPFDSYHYSVTNKTDTLFVVYTNY 199
           LL  L ++KNA L LP     YS+T+       ++  Y
Sbjct: 603 LLLDLYSFKNALLKLPDLKQDYSITDSYINHLTIFMGY 640


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,579
Number of Sequences: 5004
Number of extensions: 41812
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)