Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A19
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845     34   0.085
06_03_0418 + 20581420-20583207,20583243-20583254                       29   3.2  
12_01_0465 + 3640736-3640817,3640898-3641088,3641266-3641789,364...    27   7.4  
11_03_0148 + 10762150-10762264,10762347-10762776,10764653-107647...    27   9.8  
03_05_0842 + 28110940-28111141,28111451-28111879,28112034-281128...    27   9.8  

>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
          Length = 170

 Score = 33.9 bits (74), Expect = 0.085
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 325 KFDSNNIVLIDDNGTPLGTRIHVPIPTILR 414
           +FD N IVL+++ G  +GTR+  P+P  LR
Sbjct: 126 QFDDNAIVLVNNKGELIGTRVFGPVPHELR 155


>06_03_0418 + 20581420-20583207,20583243-20583254
          Length = 599

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 9/118 (7%)
 Frame = +1

Query: 85  CGFHTXA-CLNXXXXXXXXXXXDNSEIGMRAMAEGKPPKVICVYNKQRVGFIGDRVMVAI 261
           CGF   A C              NS  G+ A A   PP V+   N+ R       + ++ 
Sbjct: 74  CGFFCGAPCDRKSFLFGVFLVSTNSTGGVAAAAAAPPPVVVWSANRDRPVRDNATLQLSD 133

Query: 262 KG----QKKKGILVGLKQTQK----VKVPKFDSNNIVLIDDNGTPLGTRIHVPIPTIL 411
            G    +   G  V    T        V   DS N+VL DD+G+P+      P   +L
Sbjct: 134 AGDLVLRDAVGAFVWSTNTSAGHAVTGVRLSDSGNLVLFDDSGSPVWQSFDHPADVLL 191


>12_01_0465 +
           3640736-3640817,3640898-3641088,3641266-3641789,
           3643726-3644029
          Length = 366

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 366 SIVIY*NYVVAVELWYFDLLCLLETYKNAFLLLPFDSYHYSVTNKTD 226
           S V Y  YV+     YFD    LE+Y N   ++  DSY +    +T+
Sbjct: 31  SYVSYDRYVLDTSEVYFDDCIPLESYLNIRPMVTSDSYQFRSFGETN 77


>11_03_0148 +
           10762150-10762264,10762347-10762776,10764653-10764735,
           10764980-10765068,10765178-10765251,10765333-10765383,
           10765687-10765763,10766237-10767012
          Length = 564

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 282 HSCRSQANT-KGQSTKVRQQQHSFNR*QWNTSRNQNTCTHTNYPPNNFERE 431
           +SCR +  T KG+     +++ +         +   T T TN+P +N+E+E
Sbjct: 196 NSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPVSNYEKE 246


>03_05_0842 +
           28110940-28111141,28111451-28111879,28112034-28112806,
           28114046-28114237,28115116-28115277,28115395-28115861,
           28116339-28116384,28116639-28116647
          Length = 759

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 183 RKTSESNLCIQQTTCRFYW*QSNGSYQRAKEER--HSCRSQAN 305
           +K + SN+ I +   RFYW Q   +     EER  HS    AN
Sbjct: 513 KKRNTSNMKIDENWLRFYWQQMLKAVNTIHEERIVHSDLKPAN 555


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,630,052
Number of Sequences: 37544
Number of extensions: 237268
Number of successful extensions: 496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)