Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A19
         (547 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    27   0.53 
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           24   3.8  

>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 26.6 bits (56), Expect = 0.53
 Identities = 12/56 (21%), Positives = 24/56 (42%)
 Frame = +3

Query: 243 QSNGSYQRAKEERHSCRSQANTKGQSTKVRQQQHSFNR*QWNTSRNQNTCTHTNYP 410
           Q     QR ++++   + +   + Q  + +QQQH   + QW   + Q      + P
Sbjct: 329 QQRQQQQRQQQQQQQQQQRQQQQRQQQQQQQQQHQQQQQQWQQQQQQQQQPRQSLP 384


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +3

Query: 258 YQRAKEERHSCRSQANTKGQSTKVRQQQHSFNR*QWNTSRNQNTCTHTNYPP 413
           YQ  ++++   + Q  ++ Q  + +QQQ       W+ S   N  T +  PP
Sbjct: 410 YQPQQQQQQQQQQQPQSQQQQQQQQQQQQQSGSATWSGSNTLN-YTQSIQPP 460


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,528
Number of Sequences: 2352
Number of extensions: 10073
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50460840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)