Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_A19
(547 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29536-3|AAA68795.2| 179|Caenorhabditis elegans Hypothetical pr... 75 3e-14
AL021566-1|CAA16501.1| 328|Caenorhabditis elegans Hypothetical ... 31 0.41
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr... 31 0.72
AL132948-43|CAB61061.2| 511|Caenorhabditis elegans Hypothetical... 30 1.2
U97593-7|AAB52878.1| 591|Caenorhabditis elegans Prion-like-(q/n... 29 1.7
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 29 1.7
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 29 1.7
Z81117-3|CAB03318.1| 334|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81576-8|CAB76724.1| 440|Caenorhabditis elegans Hypothetical pr... 28 3.8
AL023837-4|CAB76749.1| 440|Caenorhabditis elegans Hypothetical ... 28 3.8
U97008-5|AAB52311.2| 338|Caenorhabditis elegans Serpentine rece... 28 5.0
U80024-2|AAK18892.1| 327|Caenorhabditis elegans Serpentine rece... 28 5.0
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 28 5.0
AL021503-5|CAA16416.2| 325|Caenorhabditis elegans Hypothetical ... 28 5.0
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 28 5.0
Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical pr... 27 6.7
AL023856-1|CAA19566.1| 327|Caenorhabditis elegans Hypothetical ... 27 6.7
Z80216-9|CAH10778.1| 403|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z80216-8|CAB02284.2| 261|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF016425-10|AAB65334.2| 336|Caenorhabditis elegans Serpentine r... 27 8.8
>U29536-3|AAA68795.2| 179|Caenorhabditis elegans Hypothetical
protein F45E12.5b protein.
Length = 179
Score = 74.9 bits (176), Expect = 3e-14
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Frame = +1
Query: 148 DNSEIGMRAMAEGKPPKVICVYNKQRVGF------IGDRVMVAIKGQKKKGILVGLK--- 300
DNS +G A GK P I VY + R +GD+++VAI+GQ +K +VG
Sbjct: 63 DNSALGKEADTTGKLPYCIHVYKQGRRAKHMPHAELGDKILVAIRGQMRKAYVVGANTHV 122
Query: 301 QTQKVKVPKFDSNNIVLIDDNGTPLGTRIHVPIPTILRTILKEKTHSKGADYTKLLAIAT 480
+K VP D N IVL+D+ G PLG RI PIPT K + ++K+LA+A
Sbjct: 123 HYRKHGVPVTDQNMIVLLDEEGNPLGNRITAPIPT------KLMANRGNVQFSKVLALAN 176
Query: 481 KFV 489
KF+
Sbjct: 177 KFI 179
>AL021566-1|CAA16501.1| 328|Caenorhabditis elegans Hypothetical
protein F08E10.1 protein.
Length = 328
Score = 31.5 bits (68), Expect = 0.41
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -3
Query: 389 CILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPT----RMPFFFCPLIATITLSPIKPTR 222
CI+ + S+K +L F +C+CL T +P+ P IA L PI+
Sbjct: 36 CIICKTPAHMKSVKWLL----FNLHCWCICLDITFSFLSIPYILLPAIAGYGLGPIESPG 91
Query: 221 CLLYTQITF 195
Y ITF
Sbjct: 92 LFFYLAITF 100
>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
F52B5.3 protein.
Length = 1425
Score = 30.7 bits (66), Expect = 0.72
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 282 HSCRSQANTKGQSTKVRQQ-QHSFNR*QWNTSRNQNTCTHTNYPPNNF 422
HS +Q +T+ +S K ++ H +R Q +N T T +N+P +NF
Sbjct: 1252 HSDPNQKSTERESRKPKEAVSHGNSRKQSKPPKNHQTKTTSNFPSHNF 1299
>AL132948-43|CAB61061.2| 511|Caenorhabditis elegans Hypothetical
protein Y39B6A.41 protein.
Length = 511
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 122 GXLQGF-VLLITLKSECXPWPKENLRK*FVYTTNNVSVLLVT 244
G LQGF V+LI +EC P K L F+ + + LLVT
Sbjct: 125 GMLQGFRVVLIIWIAECSPDSKRGLTSLFINSGGVIMTLLVT 166
>U97593-7|AAB52878.1| 591|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform b protein.
Length = 591
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 243 QSNGSYQRAKEER-HSCRSQANTKGQSTKVRQQQHSFNR*QWNTSRNQNTCTHTN 404
Q +G Q E R +S + +N Q+ + +QQQH + N R N+ +TN
Sbjct: 17 QPSGGQQSYNETRQYSSNATSNYPSQTQQYQQQQHQYQSDHSNAQRLLNSGYNTN 71
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 243 QSNGSYQRAKEER-HSCRSQANTKGQSTKVRQQQHSFNR*QWNTSRNQNTCTHTN 404
Q +G Q E R +S + +N Q+ + +QQQH + N R N+ +TN
Sbjct: 436 QPSGGQQSYNETRQYSSNATSNYPSQTQQYQQQQHQYQSDHSNAQRLLNSGYNTN 490
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 243 QSNGSYQRAKEER-HSCRSQANTKGQSTKVRQQQHSFNR*QWNTSRNQNTCTHTN 404
Q +G Q E R +S + +N Q+ + +QQQH + N R N+ +TN
Sbjct: 601 QPSGGQQSYNETRQYSSNATSNYPSQTQQYQQQQHQYQSDHSNAQRLLNSGYNTN 655
>Z81117-3|CAB03318.1| 334|Caenorhabditis elegans Hypothetical
protein T06E6.9 protein.
Length = 334
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = -3
Query: 410 RIVGMGTCILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPTRMPFFFCPLIATITL 243
+I+G+ CIL ++S+K +LL S+ +L F + + + F P++ T+ L
Sbjct: 25 QILGL-YCILFKTPQTMNSVKWVLLNSHIWSLIFDITVTALTITFLVFPVLGTVPL 79
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +3
Query: 246 SNGSYQRAKEERHSCRSQ----ANTKGQSTK-VRQQQHSFNR*QWNTSRNQNTCTHTNYP 410
S+ +RA+ H RS+ ++ +G S+K RQQQH + + SR + + YP
Sbjct: 250 SSSRRRRARRRSHRSRSRTYSTSSDRGSSSKRSRQQQHMKRKTPSSPSRRSRSRSPPPYP 309
Query: 411 PNN 419
P +
Sbjct: 310 PGH 312
>Z81576-8|CAB76724.1| 440|Caenorhabditis elegans Hypothetical
protein Y37H2C.3 protein.
Length = 440
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 324 WYFDLLCLLETYKNAFLLL-PFDSYHYSVTNKTDTLFVVYTN 202
W F + L Y N L L P S Y+ N+TD++ +Y N
Sbjct: 161 WNFKTITLSAGYFNTILTLSPTHSMIYTFLNRTDSIVGLYEN 202
>AL023837-4|CAB76749.1| 440|Caenorhabditis elegans Hypothetical
protein Y37H2C.3 protein.
Length = 440
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 324 WYFDLLCLLETYKNAFLLL-PFDSYHYSVTNKTDTLFVVYTN 202
W F + L Y N L L P S Y+ N+TD++ +Y N
Sbjct: 161 WNFKTITLSAGYFNTILTLSPTHSMIYTFLNRTDSIVGLYEN 202
>U97008-5|AAB52311.2| 338|Caenorhabditis elegans Serpentine
receptor, class h protein231 protein.
Length = 338
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -3
Query: 389 CILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPTRMPFFFCPLIATITLSPIKPTRCLLY 210
CI+ + SIK +LL + + + + +P+ P IA L PI+ Y
Sbjct: 36 CIICKTPNHMRSIKWLLLNLHTWCILLDITISFLGIPYILYPAIAGYGLGPIESPGLFFY 95
Query: 209 TQITF 195
+TF
Sbjct: 96 LGVTF 100
>U80024-2|AAK18892.1| 327|Caenorhabditis elegans Serpentine
receptor, class h protein125 protein.
Length = 327
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = -3
Query: 425 FKIVRRIVGMGTCILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPTRMPFFFCPLIATIT 246
F+I I+G CI+ + ++K +L+ +F T+ + + +PF P +A +
Sbjct: 29 FEIPFHIIG-AYCIIRKTPERMKNVKLNMLIKHFSTIFMSLSMSLFIIPFMMLPALAGVP 87
Query: 245 L 243
L
Sbjct: 88 L 88
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 27.9 bits (59), Expect = 5.0
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +3
Query: 162 RNAXHGRRKTS---ESNLCIQQTT--CRFYW*QSNGSYQRAKEERHSCRSQANTKGQSTK 326
RN H RR S +S +QQ + FY QSN YQ++ R S NT +
Sbjct: 12 RNDEHTRRNRSPSVDSVSRVQQQSGGFAFYNQQSNHQYQQSHPRRTSFSRDGNTGYYNNH 71
Query: 327 VRQQQHSFNR*QWNTSRNQNTCTHTNYPPN 416
++ ++N R+ N ++NY N
Sbjct: 72 SGNKRQTYN--NQRGGRSYNHRGNSNYQQN 99
>AL021503-5|CAA16416.2| 325|Caenorhabditis elegans Hypothetical
protein Y68A4A.9 protein.
Length = 325
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -3
Query: 389 CILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPT----RMPFFFCPLIATITLSPIKPTR 222
CI+ + S K +L F +C+CL T +P+ P IA L PI+
Sbjct: 36 CIVCKTPAHMKSDKWLL----FNLHCWCICLDITFSFLGIPYILLPAIAGYGLGPIESPG 91
Query: 221 CLLYTQITF 195
Y +TF
Sbjct: 92 LFFYLAVTF 100
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 27.9 bits (59), Expect = 5.0
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +3
Query: 162 RNAXHGRRKTS---ESNLCIQQTT--CRFYW*QSNGSYQRAKEERHSCRSQANTKGQSTK 326
RN H RR S +S +QQ + FY QSN YQ++ R S NT +
Sbjct: 12 RNDEHTRRNRSPSVDSVSRVQQQSGGFAFYNQQSNHQYQQSHPRRTSFSRDGNTGYYNNH 71
Query: 327 VRQQQHSFNR*QWNTSRNQNTCTHTNYPPN 416
++ ++N R+ N ++NY N
Sbjct: 72 SGNKRQTYN--NQRGGRSYNHRGNSNYQQN 99
>Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical
protein Y53C12B.5b protein.
Length = 276
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = -2
Query: 330 ELWYFDLLC---LLETYKNAFLLLPFDS--YHYSVTNKTDTLFVVYTNYFRRFS 184
E W ++C LL N FL L +S + Y + T FV+++N+F FS
Sbjct: 144 EFWSIKIVCFPSLLNFPHNLFLSLVSNSMIFSYFLEFSLFTNFVIFSNFFIHFS 197
>Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical
protein F54C8.2 protein.
Length = 261
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -2
Query: 321 YFDLLCLLETYKNAFLLLPFDSYHYSVTNKTDTLFVVYTNYFRRFSFGHGXH 166
Y DL+ LL+ YKN + F+ + V +N + HG H
Sbjct: 45 YADLIALLDQYKNDLEAVGFNDLEQARRRAPSVDITVGSNSTNLVDYSHGRH 96
>AL023856-1|CAA19566.1| 327|Caenorhabditis elegans Hypothetical
protein Y94A7B.4 protein.
Length = 327
Score = 27.5 bits (58), Expect = 6.7
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = -3
Query: 434 VFSFKIVRRIVGMGTCILVPRGVPLSSIKTMLLLSNFGTLTFCVCLRPTRMPFFFCPLIA 255
+ F I + G G CIL + + S+K L +F + + L PF P +A
Sbjct: 17 ISGFSIPIHLFG-GYCILFKTPLVMKSVKWTLFNLHFWSAALDILLSLLAQPFLCSPFLA 75
Query: 254 TITLSPIK--PTRCLL 213
L +K PT L+
Sbjct: 76 GFPLGILKFAPTDVLV 91
>Z80216-9|CAH10778.1| 403|Caenorhabditis elegans Hypothetical
protein F10G8.9b protein.
Length = 403
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 166 MRAMAEGKPPKVICVYNKQRVGFI 237
MRA+A G P + ++K+R GF+
Sbjct: 196 MRALARGDQPNISRPFDKKRAGFV 219
>Z80216-8|CAB02284.2| 261|Caenorhabditis elegans Hypothetical
protein F10G8.9a protein.
Length = 261
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 166 MRAMAEGKPPKVICVYNKQRVGFI 237
MRA+A G P + ++K+R GF+
Sbjct: 54 MRALARGDQPNISRPFDKKRAGFV 77
>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
protein C08B11.3 protein.
Length = 1244
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 336 QQHSFNR*QWNTSRNQNTCTHTNYPPN 416
Q+ + NR Q++T +Q HTN PP+
Sbjct: 551 QRENLNREQYSTQSSQPHPPHTNVPPS 577
>AF016425-10|AAB65334.2| 336|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 13 protein.
Length = 336
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -3
Query: 371 GVPLSSIKTMLLLSNFGTLTFCVCLRPTRMPFFFCPLIATITLS 240
GV L +++ L ++ T RP FF+C + + T+S
Sbjct: 145 GVLLGALQIALAIAYLTTRYIHAAFRPASFTFFYCQTLVSSTIS 188
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,403,089
Number of Sequences: 27780
Number of extensions: 231084
Number of successful extensions: 708
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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