Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_A18
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 29 0.58
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 27 2.4
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 26 5.5
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 26 5.5
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 26 5.5
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 26 5.5
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 26 5.5
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 7.2
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 25 9.5
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 25 9.5
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +1
Query: 352 PGKPPPGMDALIKLEALQHIEYMQGVQESMDNSETPYSRAIGDTQKKWFQENKKSLILII 531
P P + +K E LQH+ Q E +D + + KW +E K+S + +
Sbjct: 563 PKSTPNHTNIKVKSERLQHVRMAQQKAEQLDEERSRLREPVQQIVNKW-KEGKESNLRAL 621
Query: 532 LVRI 543
L +
Sbjct: 622 LASL 625
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -3
Query: 392 SFISASIPGGGFPGSAEF*R--GKGGGHIHFAS 300
SF PGGGFPG + + G GGG F S
Sbjct: 440 SFPGGGFPGGGFPGGSYNSQGFGMGGGFPGFTS 472
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 120 PTLTYSILPLNSQLSTFNINIHTFVSKQNTRI 25
PT+ I+PL ST ++ I TF ++ N +I
Sbjct: 154 PTILLPIVPLTVAASTGSVVIETFSTRLNKKI 185
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 120 PTLTYSILPLNSQLSTFNINIHTFVSKQNTRI 25
PT+ I+PL ST ++ I TF ++ N +I
Sbjct: 154 PTILLPIVPLTVAASTGSVVIETFSTRLNKKI 185
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 120 PTLTYSILPLNSQLSTFNINIHTFVSKQNTRI 25
PT+ I+PL ST ++ I TF ++ N +I
Sbjct: 154 PTILLPIVPLTVAASTGSVVIETFSTRLNKKI 185
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 389 NLRHCSILSICRVSKKVWIILKHLIV 466
+LRH S++S+ + V+I+L H I+
Sbjct: 161 SLRHTSVISLIALCYLVFIVLYHFII 186
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 120 PTLTYSILPLNSQLSTFNINIHTFVSKQNTRI 25
PT+ I+PL ST ++ I TF ++ N +I
Sbjct: 154 PTILLPIVPLTVAASTGSVVIETFSTRLNKKI 185
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 501 LKPFFLCVPNSSTIRCFRIIHTFLDTLHILNMLQCLKFYKCIHSGWWFP 355
L FF N++ +R + + TF L ++ KF K I WWFP
Sbjct: 316 LHAFFATAYNNN-LRLYSV--TFHKGYMSLQLMDRKKFAKAIWKLWWFP 361
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 665 LVSNGIFEQDIDPLQNVGLTRN 600
+ SNGI E D+D + LT+N
Sbjct: 465 MASNGILENDVDMEELASLTKN 486
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -2
Query: 135 RCQCDPTLTYSILPLNSQLSTF-NIN 61
RC CDPT T LP + + NIN
Sbjct: 352 RCLCDPTGTIDYLPFSCAIKWLENIN 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,431
Number of Sequences: 5004
Number of extensions: 69434
Number of successful extensions: 191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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