Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A18
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    33   0.35 
01_01_1210 + 9749166-9749358,9750783-9751110,9752171-9752375           30   2.5  
03_02_0094 - 5583932-5584036,5584137-5584200,5584305-5584387,558...    25   3.1  
08_02_0280 + 15266400-15266501,15266572-15266904,15267020-152670...    29   4.3  
09_02_0049 + 3566622-3566666,3567362-3567545,3567865-3568007,356...    29   5.7  
01_04_0043 + 15375459-15377606                                         29   5.7  

>06_01_0926 -
           7139220-7139318,7139394-7139478,7139573-7139643,
           7139996-7140076,7140805-7140895,7141242-7141330,
           7141749-7141802,7141906-7142085,7142175-7142237,
           7142575-7142705,7142807-7142900,7143343-7143684,
           7143957-7144348,7145010-7148487,7149101-7149187,
           7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +1

Query: 331 PR*NSADPGKPPPGMDALIKLEALQHIEYMQGVQESMDNSETPYSRAIGDTQKKWFQEN 507
           P   SAD  KP     A++K +  ++I + +  Q S+ +++TP SR +G   K+ +Q N
Sbjct: 492 PSQTSADDVKPSESTAAVVKKQWQRNIGFQKQPQSSVTDAKTPESRGMG---KRLWQRN 547


>01_01_1210 + 9749166-9749358,9750783-9751110,9752171-9752375
          Length = 241

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 495 PFFLCVPNSSTIRCFRIIHTFLDTLHILNMLQCLKFYKCIHSGW-WFPGIRRVLAG 331
           P FL V NSS++    II     T+ ++  L  L FY      + W     ++L G
Sbjct: 152 PVFLAVGNSSSMMILAIIVLLFSTITVMTSLVALSFYGASQIKFHWVERYDKILVG 207


>03_02_0094 -
           5583932-5584036,5584137-5584200,5584305-5584387,
           5584523-5584588,5584711-5584801,5585259-5585392,
           5586219-5586413,5586886-5587015,5587873-5587958
          Length = 317

 Score = 25.0 bits (52), Expect(2) = 3.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 523 GLAIFCFPETIFFVCPQ*LYYKVFQNYPYFL 431
           GLA F FPE  +F  P+ L    FQ+Y Y L
Sbjct: 172 GLAEFYFPEKEYFKGPELLV--DFQSYDYSL 200



 Score = 23.0 bits (47), Expect(2) = 3.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 457 VFQNYPYFLGHPAYTQYAAMPQVL 386
           +F+  P+F GH  + Q   + +VL
Sbjct: 213 IFRKEPFFYGHDNHDQLVKIAKVL 236


>08_02_0280 +
           15266400-15266501,15266572-15266904,15267020-15267083,
           15267924-15267976,15268248-15268303,15268986-15269054,
           15269187-15269372,15270241-15270328
          Length = 316

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 369 GWWFPGIRRVLAGKGGGSYSFRFETYLRITGIIVGHSSSQFNRR*ADPE 223
           G W     +VL G GGG Y+ R    +   G+ VGH  S ++    +P+
Sbjct: 199 GNWHGNGEKVLLGIGGGHYAPRHMDIVTKDGVWVGHLLSGYSLPMEEPK 247


>09_02_0049 +
           3566622-3566666,3567362-3567545,3567865-3568007,
           3568085-3568148,3571965-3572089,3572430-3572485,
           3573364-3573432,3574984-3575169,3575320-3575407
          Length = 319

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 369 GWWFPGIRRVLAGKGGGSYSFRFETYLRITGIIVGHSSSQFN 244
           G W     +VL G GGG Y+ R    +   GI VGH  S ++
Sbjct: 202 GSWQGNSEKVLLGIGGGHYAPRHMDIVIKDGIWVGHLLSGYS 243


>01_04_0043 + 15375459-15377606
          Length = 715

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 459 RCFRIIHTFLDTLHILNMLQCLKFYKCIHSGWWFPGIRRVL 337
           R FR+I T L  L      +   FY    SGWWFP +  +L
Sbjct: 297 RVFRVIETELSFLADFLYSKLTVFYA---SGWWFPVLNSML 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,969,457
Number of Sequences: 37544
Number of extensions: 456837
Number of successful extensions: 1219
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)