Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A18
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006614-1|AAF39762.2|  472|Caenorhabditis elegans Hypothetical ...    29   3.9  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical...    29   5.1  
AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical...    28   6.8  
Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical p...    28   9.0  

>AC006614-1|AAF39762.2|  472|Caenorhabditis elegans Hypothetical
           protein C34H3.1 protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 504 FLKPFFLCVPNSSTIRCFRIIHTFLDTLHILNMLQCLKFYKCIH 373
           F+ PFFL +  +S +    I   F+   +   ML C K YK  H
Sbjct: 278 FMHPFFLVLVLASFVAFLVIATWFIVRRYTGTMLNCFKMYKSKH 321


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
           protein C27F2.8 protein.
          Length = 1715

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 120 PTLTYSILPLNSQLSTFNINIHTFVSKQNTRI 25
           PT   S + L++ +STFN+++ T+  + N  +
Sbjct: 425 PTFDNSTIYLHTNVSTFNLSLSTYTGRMNVEL 456


>AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.1 protein.
          Length = 421

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +1

Query: 502 ENKKSLILIILVRITDQTV*NIVLSSILNKYA*FRVNPTF*RGSISCSKIPLLTNISLKL 681
           E K+    +IL+  T Q +  + LS ++NK     +NP F + +   S +  LT+  ++L
Sbjct: 129 EPKRDATSLILINKTSQVLPYVDLSQLVNKATRMLLNPIFTKKTKKMSNLEQLTHGLIEL 188


>AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical
           protein Y116A8C.33 protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 7/26 (26%), Positives = 22/26 (84%)
 Frame = +1

Query: 382 LIKLEALQHIEYMQGVQESMDNSETP 459
           ++K+ +++H+EY++G+ +S++++  P
Sbjct: 202 MLKVSSVRHVEYLEGMNKSIESTFKP 227


>Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical
           protein T10C6.3 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = -2

Query: 474 NSSTIRCFRIIHTFLDTL---HILNMLQC-LKFYKCIHSGWWFPGIRRVLAGKGGGSYSF 307
           +SS IR F + +  L  +   +++ + +C   FY   H GW F G   V  G     YS 
Sbjct: 134 SSSMIRTFIVFNWLLSLVAGSYLVVVRECNFVFY---HFGWLFAGSVSVKCGTLLSLYSI 190

Query: 306 RFETYLRITGIIVG 265
             +T L IT  IVG
Sbjct: 191 SIQTVLSIT--IVG 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,163,771
Number of Sequences: 27780
Number of extensions: 396888
Number of successful extensions: 976
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)