Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A17
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    64   1e-10
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    53   3e-07
AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical ...    29   2.7  
U00055-2|AAA50721.1|  223|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF022975-3|AAB70674.1|  548|Caenorhabditis elegans Hypothetical ...    29   3.6  
U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    28   8.3  

>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
 Frame = +2

Query: 350 LHPLVIMNVSEHWTRLKAQEG-FPQTVVGALIGKQKGRNIEVMNSFELVFSMXXXXXXXX 526
           LHPLVIM +SEH++R K Q+G   + V GA++G+Q GR +E +NSF L            
Sbjct: 16  LHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKMETEEMAEPVT 75

Query: 527 XXYYNM--KEEQFKQVFSDMDFLGWYTTGD 610
               ++  + +Q+ +VF ++  +G Y  G+
Sbjct: 76  FSTEHLLQRADQYLEVFPELQVIGLYCAGE 105


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
 Frame = +2

Query: 350 LHPLVIMNVSEHWTRLKAQEGFPQTVVGALIGK-QKGRNIEVMNSFELVFS---MXXXXX 517
           +HPLV+++V +H+ R+   +   + VVG L+G  +K + +++ NSF + F          
Sbjct: 43  VHPLVLLSVVDHFNRVSKTQSVKR-VVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKSTW 101

Query: 518 XXXXXYYNMKEEQFKQVFSDMDFLGWYTTGDAPSERDIAVHRQICDINECPVMLMLNPAG 697
                Y       F +V +    +GWY TG    + DIA++ Q+      PV+++++   
Sbjct: 102 FLDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAEP 161

Query: 698 XN 703
            N
Sbjct: 162 KN 163


>AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical
           protein K09C6.7 protein.
          Length = 587

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 113 VLSRLSQSICRYLQFNIYDLTIIFSSLHFGDNYSSAG 3
           V+  + + +CRYL  N Y  TI         N+ SAG
Sbjct: 264 VIGNMGRVVCRYLALNQYHQTIYHFHFRAAINFDSAG 300


>U00055-2|AAA50721.1|  223|Caenorhabditis elegans Hypothetical
           protein R02F2.5 protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 194 DRIDFEMEVEVESASSGPPIEVPNPTSPAP 283
           D+ + E+E EVE   S P   VP PT PAP
Sbjct: 102 DQTEKEVEKEVEKRKSAPRAPVPAPT-PAP 130


>AF022975-3|AAB70674.1|  548|Caenorhabditis elegans Hypothetical
           protein K09C6.8 protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 113 VLSRLSQSICRYLQFNIYDLTIIFSSLHFGDNYSSAG 3
           V+  +   +CRYL  N Y  TI         N+ SAG
Sbjct: 79  VIGNMGMVVCRYLALNQYHQTIYHFHFRAAINFDSAG 115


>U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical
           protein T12E12.1 protein.
          Length = 482

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 277 GAYNTRQQ*ECSSYDCYSRFGDRLSPSFSYYECFR 381
           G  N  Q   C  + C+  FGD  S    YYEC R
Sbjct: 298 GGCNHIQCTRCRHHFCWMCFGDWKSHGSEYYECSR 332


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 221 EVESASSGPPIEVPNPTSPAPTTP 292
           E   A   P  EVPNP  P+P +P
Sbjct: 569 ETTDAPEEPATEVPNPQPPSPPSP 592


>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 245 PPIEVPNPTSPAPTTPG 295
           PP   P PT+PAP+ PG
Sbjct: 59  PPPATPPPTTPAPSCPG 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,743,600
Number of Sequences: 27780
Number of extensions: 309043
Number of successful extensions: 1036
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)