Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A14
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    28   1.5  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    28   2.0  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   7.9  

>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 384 VNELRSRSRSKTPFLRSTCDGENCTEGDDHTHHK 485
           V+E++ R  S    + STC   +  EGD  TH K
Sbjct: 206 VDEIQQRHPSAGHSIDSTCQSNSFLEGDSATHKK 239


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 584 SHFPNSLNCFCNRWWAKLFHRGVSTL-HRCFSACLV 480
           + F N L  + NR+W KL +R   TL +  ++ CLV
Sbjct: 125 ARFINHLFGYLNRYWVKLKNRFTETLVYDIYTLCLV 160


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 345  TDISIAEIMENLAVNELRSRSRSKTPFLRSTCDGENCTEGDDHTHHKAGRKTPVK 509
            +DI+I +  +N     +     SK+P L S+  G++           AG K PVK
Sbjct: 1286 SDINIVKTEDNSHGLSVEENRISKSPGLDSSDSGKSRKRSQSVDSEDAGSKKPVK 1340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,420
Number of Sequences: 5004
Number of extensions: 62774
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)