Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A12
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   2.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.1  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -1

Query: 798 TLCEFDFIXNVREFEIF--TLFT 736
           T C FD++ +  E  IF  T+FT
Sbjct: 195 TSCSFDYLTDTNEIRIFVATIFT 217


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 261 VAKSIPSRENPPKYEGYC 208
           V  +IP+ ENP  Y  +C
Sbjct: 269 VTAAIPTSENPADYRYFC 286


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 261 VAKSIPSRENPPKYEGYC 208
           V  +IP+ ENP  Y  +C
Sbjct: 269 VTAAIPTSENPADYRYFC 286


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 261 VAKSIPSRENPPKYEGYC 208
           V  +IP+ ENP  Y  +C
Sbjct: 269 VTAAIPTSENPADYRYFC 286


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +3

Query: 468 GNCVCD*FYQYTERNQRCSRIPI 536
           G C C   YQ     Q C+  PI
Sbjct: 245 GGCHCKPGYQADVEKQECTECPI 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,471
Number of Sequences: 438
Number of extensions: 4929
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)