Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_A11
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 46 6e-06
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 33 0.060
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 30 0.32
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 30 0.43
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 29 0.56
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 28 1.3
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 27 4.0
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 4.0
SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.2
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 9.2
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.2
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 9.2
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 46.0 bits (104), Expect = 6e-06
Identities = 28/115 (24%), Positives = 58/115 (50%)
Frame = +2
Query: 368 EAISELVKCDEKRRTYSQKEIISPILDILQKEITTENAALIKQCFRALGNLCCDCDSSRK 547
+++++ K ++R + + IS L++L +E + + +QCFR L N C D + +R
Sbjct: 11 QSLADRSKNPQERSLF--RNYISEALELL-RETPSSPTVVHEQCFRFLANSCSDNNENRA 67
Query: 548 IILECGGVPNIINLMKKYFSAHSQLSMYAFKTLLNFAIGGQEFTNAMVDGGVVEM 712
GG I+++K Y S ++ S AF + N + +E+ + D ++ +
Sbjct: 68 AFFNLGG----IDVLKPYCSKDNEYSALAFAVIHNCILDSREYRAQVADAQILNL 118
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 32.7 bits (71), Expect = 0.060
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Frame = +2
Query: 176 MDECSAXKSTSLETLV---IQNISNVKELKSKLSEIIKKGKDYEFDVSSCVKTLIKSNDQ 346
+DE + ST+ ETLV + N S++KE SK E+ +K + E DV K ++
Sbjct: 517 LDEYAQNPSTASETLVNKELANFSSIKEAVSKTLELREKVRALECDV-EIQKQTVQYQIS 575
Query: 347 EIVLLTVEAISELVKCDEKRRTYS--QKEIISPILDILQKEITTENAALIKQCFRALGNL 520
V +SE +K E S + E + ++L++ + T ++++ A GN+
Sbjct: 576 NAVKENSNTLSEQIKNLESELNSSKIKNESLLNERNLLKEMLATSRSSILSHNSSA-GNI 634
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 30.3 bits (65), Expect = 0.32
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 548 IILECGGVPNIINLMKKYFSAHSQLSMYAFKTLLNFAIGGQEFTNAM 688
I+L C +PN+ KKYFS+ + + TL F++ Q F+ +
Sbjct: 117 ILLLCQNLPNVTTNAKKYFSSLADGHNFTL-TLYKFSLDNQTFSQLL 162
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 29.9 bits (64), Expect = 0.43
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Frame = +2
Query: 326 LIKSNDQEIVLLTVEAISELVKCDEKRRTYSQKEIISPILDI-----LQKEITTENAALI 490
L+ S D EI++ AIS L + E I ILD+ L + +++ + +
Sbjct: 256 LLYSEDVEIIVDACWAISYL--------SDGPNEKIGAILDVGCAPRLVELLSSPSVNIQ 307
Query: 491 KQCFRALGNLCCDCDSSRKIILECGGVPNIINLMKKYFSAHSQLSMYAFKTLLNFAIGGQ 670
R++GN+ D+ +II++CG + +L+ + A T+ N G
Sbjct: 308 TPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLLS---HQKENIRKEACWTISNITAGNT 364
Query: 671 EFTNAMVDGGVVEML 715
+ A+++ ++ L
Sbjct: 365 QQIQAIIESNLIPPL 379
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 29.5 bits (63), Expect = 0.56
Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +2
Query: 326 LIKSNDQEIVLLTVEAISELVK-CDEKRRTYSQKEIISPILDILQKEITTENAALIKQCF 502
LI + D+++++ + AIS L +EK + I ++++L +A +
Sbjct: 256 LIYTLDEDVLVDALWAISYLSDGANEKIQAIIDAGIPRRLVELLMHP----SAQVQTPAL 311
Query: 503 RALGNLCCDCDSSRKIILECGGVPNIINLMKKYFSAHSQLSMYAFKTLLNFAIGGQEFTN 682
R++GN+ D ++I+ CG + +++L+ S + A T+ N G
Sbjct: 312 RSVGNIVTGDDVQTQVIINCGALSALLSLLS---SPRDGVRKEACWTISNITAGNSSQIQ 368
Query: 683 AMVDGGVVEML 715
+++ ++ L
Sbjct: 369 YVIEANIIPPL 379
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 491 KQCFRALGNLCCDCDSSRKIILECGGVPNIINLMK 595
+Q ALGN+ D R +L+CG + ++N+++
Sbjct: 181 EQAVWALGNIAGDSPMCRDHVLQCGVLEPLLNIIE 215
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -3
Query: 375 MASTVRSTISWSLLFIKVLTHEETSNS*SFPFLIISLNFDFSSFTLLIF 229
MAS+V S + W+L +L H TSN + F + L F F LIF
Sbjct: 210 MASSVLSGLRWALTQKLLLDHPWTSNPFTSLFALTPLMFLFLLVAGLIF 258
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 579 MLGTPPHSKIIFLDESQSQHKLPRARKH 496
+LGTP + +I ++ + H LP R H
Sbjct: 241 VLGTPSYHEISVMNPNYVNHSLPNVRPH 268
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 390 LTSSDMAST--VRSTISWSLLFIKVLTHEETSNS*SFPFLII 271
LT+SD+A V+S SW+ L + + T + NS P+L I
Sbjct: 56 LTNSDLAQLPEVQSLPSWAALLLVMATENASPNSFWRPYLSI 97
>SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 116
Score = 26.2 bits (55), Expect = 5.2
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +2
Query: 179 DECSAXKSTSLETLVIQNISNVKELKSKLSEIIKK-GKDYE-FDVSSCVKTLIKSNDQEI 352
D+ + KSTS +T Q + N+ EL++K+ +I+ GK E +++ ++ K + +
Sbjct: 6 DDLFSEKSTSSDT---QQVQNILELEAKIPDILSSAGKCIEAIQLNNSLEDFRKYSKE-- 60
Query: 353 VLLTVEAIS 379
L TVE IS
Sbjct: 61 FLETVEFIS 69
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 212 ETLVIQNISNVKELKSKLSEIIKKGKDYEF-DVSSCV 319
+TLV Q+ +K + KLS + K+ D + ++ SC+
Sbjct: 760 QTLVPQHEEKIKSFEEKLSALKKEMSDVDLKEIKSCL 796
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 209 LETLVIQNISNVKELKSKLSEIIKKGK 289
LET SN++ K KLSEI++ G+
Sbjct: 392 LETTKTVATSNLRSTKRKLSEILENGQ 418
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 485 LIKQCFRALGNLCCDCDSSRKIILECGGVPNIINLMKKY 601
LI C+ L ++ +SS GG NI+N+ +KY
Sbjct: 858 LICVCYSRLEHIKLFVESSTIYASSTGGYENILNICEKY 896
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,610
Number of Sequences: 5004
Number of extensions: 49604
Number of successful extensions: 159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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