Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_A11
(776 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 34 0.13
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 34 0.13
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 34 0.13
Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical pr... 32 0.40
AL022288-9|CAK55188.1| 452|Caenorhabditis elegans Hypothetical ... 31 1.2
AL022288-8|CAA18367.2| 402|Caenorhabditis elegans Hypothetical ... 31 1.2
AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein. 29 2.8
AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic avoid... 29 2.8
U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical pr... 29 3.7
U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical pr... 29 3.7
U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical pr... 29 4.9
AC006611-1|AAK85455.2| 348|Caenorhabditis elegans Vacuolar h at... 28 6.5
Z75549-5|CAA99918.1| 364|Caenorhabditis elegans Hypothetical pr... 28 8.6
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 28 8.6
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 8.6
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 8.6
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 33.9 bits (74), Expect = 0.13
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Frame = +2
Query: 431 ISPILDILQKEITTENAALIKQCFRALGNLCCDCDSSRKIILECGGVPNIINLMKKYFSA 610
+ IL +++K T +++++K+C + N+ + +L+ +P +IN++K S
Sbjct: 346 LDEILPLMEK---TRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLK---SG 399
Query: 611 HSQLSMYAFKTLLNFAIGG-QEFTNAMVDGGVVEMLQMVVIQ 733
+ A L N A GG AM++ VV L ++Q
Sbjct: 400 DHKCQFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQ 441
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 33.9 bits (74), Expect = 0.13
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Frame = +2
Query: 431 ISPILDILQKEITTENAALIKQCFRALGNLCCDCDSSRKIILECGGVPNIINLMKKYFSA 610
+ IL +++K T +++++K+C + N+ + +L+ +P +IN++K S
Sbjct: 346 LDEILPLMEK---TRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLK---SG 399
Query: 611 HSQLSMYAFKTLLNFAIGG-QEFTNAMVDGGVVEMLQMVVIQ 733
+ A L N A GG AM++ VV L ++Q
Sbjct: 400 DHKCQFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQ 441
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 33.9 bits (74), Expect = 0.13
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Frame = +2
Query: 431 ISPILDILQKEITTENAALIKQCFRALGNLCCDCDSSRKIILECGGVPNIINLMKKYFSA 610
+ IL +++K T +++++K+C + N+ + +L+ +P +IN++K S
Sbjct: 346 LDEILPLMEK---TRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLK---SG 399
Query: 611 HSQLSMYAFKTLLNFAIGG-QEFTNAMVDGGVVEMLQMVVIQ 733
+ A L N A GG AM++ VV L ++Q
Sbjct: 400 DHKCQFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQ 441
>Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical
protein F53B2.5 protein.
Length = 447
Score = 32.3 bits (70), Expect = 0.40
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +2
Query: 434 SPILDILQKEITTENAALIKQCFRALGNLCCDCDSSRKIILECGGVPNIINLMKK 598
S LDIL K + ++NA L Q A+ N+ DC S + L+C P ++ ++ +
Sbjct: 82 SNCLDILIKLVRSQNARLSSQTVWAIANIAADCSSCK---LKCRS-PKLLKILAR 132
>AL022288-9|CAK55188.1| 452|Caenorhabditis elegans Hypothetical
protein ZK1025.4b protein.
Length = 452
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +2
Query: 212 ETLVIQNIS-NVKELKSKLSEIIKKGKDYEFDVSSCVKTLIKSNDQEIVLLTVEA 373
E V+Q +S + ++ LSEI++ GK YE ++ C++ + + + V+L +EA
Sbjct: 121 ENGVVQKVSIQLGHREAFLSEIVEIGKSYEKGLTVCLQIVYYYSQWQNVILYIEA 175
>AL022288-8|CAA18367.2| 402|Caenorhabditis elegans Hypothetical
protein ZK1025.4a protein.
Length = 402
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +2
Query: 212 ETLVIQNIS-NVKELKSKLSEIIKKGKDYEFDVSSCVKTLIKSNDQEIVLLTVEA 373
E V+Q +S + ++ LSEI++ GK YE ++ C++ + + + V+L +EA
Sbjct: 121 ENGVVQKVSIQLGHREAFLSEIVEIGKSYEKGLTVCLQIVYYYSQWQNVILYIEA 175
>AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein.
Length = 820
Score = 29.5 bits (63), Expect = 2.8
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Frame = +2
Query: 329 IKSNDQEIVLLTVEAISELVKCDEKRRTYSQKEIISPILDILQKEITTENAALIKQCFRA 508
+K D + VLL S+++K EKR ++ I + I+ I + A + C +
Sbjct: 332 MKEKDDDDVLLNQTLNSDMLKNWEKRNKSDAEKAIITAVKIISPVIAPDYAIGYEWCLES 391
Query: 509 L-----GNLCCDCDSSRK-IILECGGVPNIINLMKKYFSAHSQLSMYAFKTL--LNFAIG 664
L L + + ++ +++ G + I ++K + S S+ + A L L F G
Sbjct: 392 LKQSVHAPLAIELEMTKAGELMKNGDIEGAIEVLKVFNSQDSKTASAAANNLCMLRFLQG 451
Query: 665 GQEFTNA 685
G+ +A
Sbjct: 452 GRRLVDA 458
>AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic
avoidance abnormal protein5 protein.
Length = 820
Score = 29.5 bits (63), Expect = 2.8
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Frame = +2
Query: 329 IKSNDQEIVLLTVEAISELVKCDEKRRTYSQKEIISPILDILQKEITTENAALIKQCFRA 508
+K D + VLL S+++K EKR ++ I + I+ I + A + C +
Sbjct: 332 MKEKDDDDVLLNQTLNSDMLKNWEKRNKSDAEKAIITAVKIISPVIAPDYAIGYEWCLES 391
Query: 509 L-----GNLCCDCDSSRK-IILECGGVPNIINLMKKYFSAHSQLSMYAFKTL--LNFAIG 664
L L + + ++ +++ G + I ++K + S S+ + A L L F G
Sbjct: 392 LKQSVHAPLAIELEMTKAGELMKNGDIEGAIEVLKVFNSQDSKTASAAANNLCMLRFLQG 451
Query: 665 GQEFTNA 685
G+ +A
Sbjct: 452 GRRLVDA 458
>U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical
protein T28D9.3a protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +2
Query: 413 YSQKEIISPI-LDILQKEITTENAALIKQCFRALGNLCCDCDSSRKII-LECGGVPNII- 583
YSQ + I L+I+ K + + + C DS R I C G P ++
Sbjct: 128 YSQIGFVMNIALNIVTKHVVGRLRPHFLDVCKLANDTCVTGDSHRYITDYTCTGPPELVL 187
Query: 584 NLMKKYFSAHSQLSMY 631
K ++S HS +S+Y
Sbjct: 188 EARKSFYSGHSAVSLY 203
>U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical
protein T28D9.3c protein.
Length = 274
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +2
Query: 413 YSQKEIISPI-LDILQKEITTENAALIKQCFRALGNLCCDCDSSRKII-LECGGVPNII- 583
YSQ + I L+I+ K + + + C DS R I C G P ++
Sbjct: 129 YSQIGFVMNIALNIVTKHVVGRLRPHFLDVCKLANDTCVTGDSHRYITDYTCTGPPELVL 188
Query: 584 NLMKKYFSAHSQLSMY 631
K ++S HS +S+Y
Sbjct: 189 EARKSFYSGHSAVSLY 204
>U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical
protein T28D9.3b protein.
Length = 342
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +2
Query: 413 YSQKEIISPI-LDILQKEITTENAALIKQCFRALGNLCCDCDSSRKII-LECGGVPNII- 583
YSQ + I L+I+ K + + + C DS R I C G P ++
Sbjct: 129 YSQIGFVMNIALNIVTKHVVGRLRPHFLDVCKLANDTCVTGDSHRYITDYTCTGPPELVL 188
Query: 584 NLMKKYFSAHSQLSMY 631
K ++S HS +S+Y
Sbjct: 189 EARKSFYSGHSAVSLY 204
>Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical
protein M162.7 protein.
Length = 690
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Frame = +2
Query: 167 LSNMDECSAXKSTSLETLV---IQNISNVKELKSKLSEIIKKG----KDYEFDVSSCVKT 325
+ N+D S + ++V +QNIS VKE+ K+ E F S+ +K+
Sbjct: 472 MRNLDNASVENIKGIPSVVSELLQNISKVKEVSDKMKENSNNKTLVMNALAFKESASIKS 531
Query: 326 LIKSNDQEIVLLTVEA 373
+I S LL +EA
Sbjct: 532 IISSVQNVYGLLDLEA 547
>AC006611-1|AAK85455.2| 348|Caenorhabditis elegans Vacuolar h
atpase protein 16 protein.
Length = 348
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 33 FKFKKKYLIKSYPHTFHTNINYAFNRIDIK*PLSCVWVYKVV 158
F+ + K + SY H FH + YAF ++ + + +W+ + +
Sbjct: 292 FEHEVKLNVHSYLHQFHFGVFYAFIKLKEQEMRNIIWIAECI 333
>Z75549-5|CAA99918.1| 364|Caenorhabditis elegans Hypothetical
protein T19C4.5 protein.
Length = 364
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 458 KEITTENAALIKQCFRALGNLCCDCDSSRKIILECGGVPNI 580
K +TT N+ Q + + C C SSR+ E GV ++
Sbjct: 240 KPLTTRNSETQMQTLKEESSFCSSCVSSRRCSHEVDGVKSV 280
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 314 CVKTLIKSNDQEIVLLTVEAISELVKCDEKRRTYSQKEIISPILDILQKEITTENAALIK 493
C+++L++ QE EA VKC E T S E + + QKEI+ E +
Sbjct: 184 CIQSLLEQRQQEKSTKEPEA----VKCTECHTTVSAIEATTCSDETCQKEISEEELKNVD 239
Query: 494 QCFRALGNLCC 526
+ R L C
Sbjct: 240 KIKRPKETLIC 250
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 275 IKKGKDYEFDVSSCVKTLIKSNDQEI-VLLTVEAI 376
+ GK+YEF + +C + ++SN + LTVE +
Sbjct: 14315 LSSGKEYEFKIEACNEAGLRSNSNVVSKKLTVEGL 14349
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 275 IKKGKDYEFDVSSCVKTLIKSNDQEI-VLLTVEAI 376
+ GK+YEF + +C + ++SN + LTVE +
Sbjct: 14315 LSSGKEYEFKIEACNEAGLRSNSNVVSKKLTVEGL 14349
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,013
Number of Sequences: 27780
Number of extensions: 273221
Number of successful extensions: 735
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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