Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A11
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   9.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   9.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   9.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   9.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   9.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   9.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   9.7  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +2

Query: 545 KIILECGGVPNIINLMKKYFSAHSQLSM-YAFKT-LLNF-AIGGQEFTNAMVDGGVVEML 715
           ++ + C GV NI    K Y S  S LS   A  T L++  A+ G+     +V  G+VE++
Sbjct: 93  QVAIICEGVMNIQKDNKSYLSLRSLLSADVAVATPLISMGALLGKTTYMQLVFMGIVELI 152

Query: 716 QMVV 727
              V
Sbjct: 153 MFTV 156


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = +1

Query: 331 KEQRPRDSTPDCRSHIRAR*MRRETSNIFSERDNQSHSRYSAK 459
           ++ R  DS    RS  +   +RR    +  +   + H R   K
Sbjct: 16  RQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKK 58


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = +1

Query: 331 KEQRPRDSTPDCRSHIRAR*MRRETSNIFSERDNQSHSRYSAK 459
           ++ R  DS    RS  +   +RR    +  +   + H R   K
Sbjct: 16  RQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKK 58


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = +1

Query: 331 KEQRPRDSTPDCRSHIRAR*MRRETSNIFSERDNQSHSRYSAK 459
           ++ R  DS    RS  +   +RR    +  +   + H R   K
Sbjct: 16  RQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKK 58


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = +1

Query: 331 KEQRPRDSTPDCRSHIRAR*MRRETSNIFSERDNQSHSRYSAK 459
           ++ R  DS    RS  +   +RR    +  +   + H R   K
Sbjct: 16  RQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKK 58


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = +1

Query: 331 KEQRPRDSTPDCRSHIRAR*MRRETSNIFSERDNQSHSRYSAK 459
           ++ R  DS    RS  +   +RR    +  +   + H R   K
Sbjct: 16  RQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKK 58


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = +1

Query: 331 KEQRPRDSTPDCRSHIRAR*MRRETSNIFSERDNQSHSRYSAK 459
           ++ R  DS    RS  +   +RR    +  +   + H R   K
Sbjct: 16  RQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKK 58


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = +1

Query: 331 KEQRPRDSTPDCRSHIRAR*MRRETSNIFSERDNQSHSRYSAK 459
           ++ R  DS    RS  +   +RR    +  +   + H R   K
Sbjct: 16  RQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKK 58


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = +1

Query: 331 KEQRPRDSTPDCRSHIRAR*MRRETSNIFSERDNQSHSRYSAK 459
           ++ R  DS    RS  +   +RR    +  +   + H R   K
Sbjct: 16  RQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKK 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,424
Number of Sequences: 438
Number of extensions: 3250
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)