Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A07
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    38   0.001
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    31   0.14 
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    28   0.97 
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    27   1.7  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   1.7  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.2  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    27   3.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.8  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   6.8  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   9.0  

>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
 Frame = +1

Query: 232 MHEAYEVSHLLNAT-VQIEAIAAFENNLLLGTRQGHLLMYSLSTNNEEQK--YQVHLLRY 402
           MH A+ +  +L  +  ++E +      + +    G L  Y +  N EE+   + +  +  
Sbjct: 1   MHRAFSLYRVLELSKARVECVFELGGLVYVSNSNGDLDSYKIYNNEEEEAADFVMEHVDV 60

Query: 403 RKNFSKKPIQQIEVIPDENLLLCLTDSTLATYNIN 507
             NF+KKPI ++     +++   L+DS +  Y I+
Sbjct: 61  YPNFTKKPITKVVSCATQDIFYALSDSQVYVYQIS 95


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 253 SHLLNATVQIEAIAAFENNLLLGTRQGHLLMYSLSTNN 366
           +HLL+  + + +I  F+  L++G   G ++++ +ST+N
Sbjct: 12  THLLDEGLDVSSIHCFDQYLIVGQCSGQVMVFDVSTDN 49


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
 Frame = +1

Query: 340 LMYSLSTNNEEQKYQVHLLRYRKN----FSKKPIQQI-----EVIPDENLLLC 471
           L+Y L T+ +  KY  H+LR   N    F+K P++ +     +++ D   LLC
Sbjct: 236 LLYKLVTSRQAIKYLEHILRTNTNGSKIFTKSPVKNLYLNWPQLVLDYGSLLC 288


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 625 RKGEHQMT--LHHYLMKPYNPKQIVKHLWS 542
           R GE  +T  +HH ++  Y PK + + LW+
Sbjct: 164 RSGEFPLTVLIHHVMLYQYYPKSLQEALWA 193


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = -2

Query: 428  IGFLLK-FFLYLNKCT*YFCSSLFVDKEYIN-----KWPCLVPNNRLFSNAAIASICTVA 267
            +GF +    LY  +   ++CSS+F+ KE+       +   L     L ++  I S+  V+
Sbjct: 1006 LGFAINNSLLYFVRALLFYCSSIFISKEFYTVEQMVQVLSLATFTLLMASTCIMSLPNVS 1065

Query: 266  LSRCETS 246
             SR  TS
Sbjct: 1066 ASRIATS 1072


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 427  IQQIEVIPDENLLLCLTDSTLATYNINGVN 516
            I Q+EVI + +LLL L+D  L +Y +  ++
Sbjct: 1042 ISQLEVIEEYSLLLLLSDKVLYSYPLEMID 1071


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 409 NFSKKPIQQIEVIPDENLLLCLTD 480
           +F K+P   I V+PD+ L++CL++
Sbjct: 289 SFWKEPGWLIPVVPDDALIICLSE 312


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -3

Query: 610  QMTLHHYLMKPYNPKQIVKHLWSVQKFLLME 518
            ++ ++ YL KP+  KQ+V    +V++F+L+E
Sbjct: 2279 EVGMNFYLTKPFTQKQLVN---AVREFVLLE 2306


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 271 TVQIEAIAAFENNLLLGTRQGHLL 342
           T+ +E + AF NN+L G  + H L
Sbjct: 345 TLDVETVRAFSNNILEGLAELHRL 368


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 307 NLLLGTRQGHLLMYSLSTNNEEQKYQVHLLRYRKNFSKKPIQQIEVIPD 453
           N  +GT +  L+   +S ++E Q   +H LR+     ++ + +IE + D
Sbjct: 139 NHTIGTERAFLIEEDVSEDDEIQMKSIHELRFAGE-QQRIVDEIEYLVD 186


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 391 LLRYRKNFSKKPIQQIEVIPDENLLLCLT-DSTLATYNING 510
           +  +R+ +    + Q+   PDE LL C +   TL  ++++G
Sbjct: 211 ICEFRRGYQHTAVCQLAFSPDELLLACASKKETLHIFSLHG 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,710
Number of Sequences: 5004
Number of extensions: 54936
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)