Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A07
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1549 - 27633229-27633340,27633418-27633509,27633601-276342...    29   2.3  
07_01_0662 + 4972953-4973645,4973758-4974046,4974790-4974803,497...    29   2.3  
10_01_0265 + 2808271-2809064,2809624-2809807                           29   3.0  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    28   7.0  
07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109...    27   9.3  
05_06_0135 + 25921970-25922190,25922662-25922692,25924979-25925578     27   9.3  
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663     27   9.3  

>07_03_1549 -
           27633229-27633340,27633418-27633509,27633601-27634270,
           27634731-27634870,27634958-27635299
          Length = 451

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +1

Query: 340 LMYSLSTNNEEQKYQVHLLRYRKNFSKKPIQ-QIEVIPDENLLLCLTDSTLATYNINGVN 516
           L  S ST N + +        RK  +K+ ++ ++E   +E+ ++CL D  LAT   N   
Sbjct: 179 LRSSSSTENFQSRTPPIRECKRKRSNKRNVRVKLETKFNEDKMVCLEDPNLATNTANENL 238

Query: 517 FPLIKTFEQTKGASLFALD 573
           F L  +  +T   S  +LD
Sbjct: 239 FSLPSSANETGNTSEVSLD 257


>07_01_0662 +
           4972953-4973645,4973758-4974046,4974790-4974803,
           4974848-4974856
          Length = 334

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 584 ETLQSKANSEAPLVCSKVFINGKLTPLMLYVASVESVRH 468
           E LQ +      ++CS+  INGKL PL L +    +  H
Sbjct: 280 ERLQEETGLNDVIICSRSPINGKLMPLRLQLPPNNAAMH 318


>10_01_0265 + 2808271-2809064,2809624-2809807
          Length = 325

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 502 INGVNFPLIKTFEQTKGASLFALDCKVSSSNGAASSDVRLCVA 630
           ++G N P++ T   T G+   A    V+  NGA  +D+R+  A
Sbjct: 144 VDGYNLPMLVTPSATSGSGKCAATGCVAELNGACPADLRVASA 186


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -3

Query: 349 STSINGLASYLIIGYSRMQLLLRSARWH*ADVKLHTLRAFYTIL*LKQQNNFV*MKTLHE 170
           ST+ NGL   LI   S++ + +   RW+   +   T R+F T+  + +   +   K   E
Sbjct: 139 STAKNGLKQLLISALSKIAIPMARDRWN--GMSEETRRSFLTV-GIDEMVAYCCAKPSDE 195

Query: 169 SESSHFVGNYDFV 131
            + S   G  DFV
Sbjct: 196 CQMSALTGALDFV 208


>07_01_0154 -
           1094256-1094672,1094954-1094977,1095867-1095891,
           1096014-1096304,1096391-1096470,1096953-1097052,
           1097143-1097204,1097650-1097750,1097940-1098117,
           1098298-1098924,1099014-1099100,1099804-1099905,
           1100265-1100348,1100580-1100657
          Length = 751

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 601 LHHYLMKPYNPKQIVKHLWSVQ 536
           LH   + PYNPK ++K  W +Q
Sbjct: 581 LHRKGLFPYNPKPLLKSFWLLQ 602


>05_06_0135 + 25921970-25922190,25922662-25922692,25924979-25925578
          Length = 283

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
 Frame = +1

Query: 427 IQQIEVIPDENLLLCLTDSTLATYNINGVNF-PLIKTF----EQTKGASLF 564
           ++ I V+PD+ + +CL ++   T  I+G++  PL K       +T+G SLF
Sbjct: 218 LEAIVVVPDDFVQVCLVNTGTGTPFISGLDLRPLKKKLYPQATETQGLSLF 268


>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
          Length = 741

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 227 VKC-TKRMKFHICLMPPCRSKQ*LHSRITY 313
           ++C T R   HI    P +SKQ +HSR+T+
Sbjct: 279 IRCYTCRRSGHISFRCPNKSKQPIHSRLTF 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,807,863
Number of Sequences: 37544
Number of extensions: 299840
Number of successful extensions: 609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)