Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A07
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   1.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    24   1.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.5  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.9  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 401 TGRILAKNLFSKLKLYRMKIYYYV*QILH*LHTT 502
           T  I+   L S+ K  ++KIY +  QILH L T+
Sbjct: 74  TRYIIRMFLISQQKTSKLKIYKWNNQILHILWTS 107


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 401 TGRILAKNLFSKLKLYRMKIYYYV*QILH*LHTT 502
           T  I+   L S+ K  ++KIY +  QILH L T+
Sbjct: 57  TRYIIRMFLISQQKTSKLKIYKWNNQILHILWTS 90


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/69 (20%), Positives = 28/69 (40%)
 Frame = +1

Query: 217 TKLCKMHEAYEVSHLLNATVQIEAIAAFENNLLLGTRQGHLLMYSLSTNNEEQKYQVHLL 396
           T +C+    +    +LN T+ I + +   N + L +     ++  +  NN E +  VH+ 
Sbjct: 156 TPVCEYDHTWWPYDILNCTIHIASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEI-VHMS 214

Query: 397 RYRKNFSKK 423
                   K
Sbjct: 215 HSESTIDSK 223


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 308 LFSNAAIASICTVALSR 258
           LFS A+I ++C ++L R
Sbjct: 128 LFSTASILNLCVISLDR 144


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 446 YRMKIYYYV*QILH*LHTTLMVLIFH 523
           YR  +YY V  IL  +   +MVLI H
Sbjct: 136 YRALLYYTVTTILAAIVGIVMVLIIH 161


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 478 DSTLATYNINGVNF 519
           D     YNING NF
Sbjct: 220 DPRYGNYNINGFNF 233


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 625 RKGEHQMTLHHYLMKPYNPK 566
           R+G  +   +++ +KPYNP+
Sbjct: 49  REGLGRRHRYNFQLKPYNPE 68


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 625 RKGEHQMTLHHYLMKPYNPK 566
           R+G  +   +++ +KPYNP+
Sbjct: 50  REGLGRRHRYNFQLKPYNPE 69


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 8   SPWSVQKLHVINHHLPSACXCT 73
           SP +  K  ++ +HL S C  T
Sbjct: 331 SPMTSTKSTIVRNHLNSTCSVT 352



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -3

Query: 412 NSSCILTNVPDTFALHYLLIK----STSINGLASYLII 311
           NS+C +TN P    L + L K    ST++  + S  I+
Sbjct: 346 NSTCSVTNSPHQKKLRFHLAKERKASTTLGIIMSAFIV 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,754
Number of Sequences: 438
Number of extensions: 3594
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)