Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A05
         (586 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.62 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.5  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -3

Query: 518 DIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYVVFIR 399
           DI+P L T    A        L   S K+P MY  VV +R
Sbjct: 545 DINPSLCTHIIYAFATLKDHKLAEASDKDPEMYDRVVALR 584


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 165 KLCGQKLCTRTSNKGRYTLTTHTSGETH 248
           KLCG K+  +     R      TS  TH
Sbjct: 366 KLCGMKIVKKRRKDKREITRKSTSSSTH 393


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 364 QESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVFRT 477
           +  H W +    + KT Y Y +   V+  G     FRT
Sbjct: 224 EPDHKWKKNDSSKKKTRYYYRSVDDVIEKGKRPGAFRT 261


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,886
Number of Sequences: 336
Number of extensions: 3119
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)