Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A05
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0025 + 203476-203655,205006-205233,205317-206000                 29   2.7  
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997...    29   3.6  
03_02_0578 + 9603118-9605633,9605766-9605781                           29   3.6  
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426...    29   3.6  
03_04_0061 - 16949038-16950006                                         28   4.8  
11_03_0021 + 9010846-9011672,9011753-9013700                           27   8.3  
10_08_0333 - 16850267-16851802                                         27   8.3  
07_03_0832 - 21823518-21823826,21823920-21824070,21824148-218243...    27   8.3  

>12_01_0025 + 203476-203655,205006-205233,205317-206000
          Length = 363

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 297 WSLCSWTSCSVLLWLWGKTRYSSGISPLATICE 395
           W L +W     LLWLW   R   G  PL  + E
Sbjct: 9   WVLATWWG-EPLLWLWQPFRAGGGAGPLGHLLE 40


>10_08_0911 -
           21499196-21499236,21499368-21499488,21499665-21499789,
           21500187-21500418,21500488-21500668,21501342-21501438,
           21501641-21501779,21502024-21502351,21502890-21503137,
           21503270-21503543,21504200-21504291,21504451-21504521,
           21505091-21505181,21506526-21507380,21507482-21507594,
           21508007-21508074,21508655-21508835,21509084-21509186,
           21509273-21509379,21510046-21511584,21511661-21511771,
           21511856-21511908,21511988-21512063,21512147-21512366,
           21512477-21512901,21513193-21513372,21513503-21515474
          Length = 2680

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 234 SGETHGTCWTKCIQLGQGCISWSLCSWTSCSV 329
           SG+ HG  W + +  G   + +S  +  SCS+
Sbjct: 58  SGQGHGNSWIEVLSTGSSVVDFSSSAAESCSI 89


>03_02_0578 + 9603118-9605633,9605766-9605781
          Length = 843

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +1

Query: 331 YYGSGVKPGTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVF-RTPALLNLVARN 507
           Y   G     L  S L P   K+R++   G   G   L  GSA A+  R     N++  +
Sbjct: 584 YMAKGTLRSHLYGSDLPPLPWKQRLEACIGAARGLHYLHTGSAKAIIHRDVKSANILLDD 643

Query: 508 GWMSIIVTLGL 540
           G+M+ +   GL
Sbjct: 644 GFMAKVADFGL 654


>01_01_0574 +
           4263247-4263615,4263945-4263992,4264308-4264514,
           4264670-4264826,4264958-4265041,4265785-4265909,
           4268100-4268218,4268535-4268619,4269087-4269134
          Length = 413

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 172 VVRNYAREPRTRVATRSQPTLRERLMA 252
           V+RNY   P  R+ T++Q   RER+++
Sbjct: 110 VLRNYVPSPSQRIRTQNQREYRERILS 136


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/64 (18%), Positives = 27/64 (42%)
 Frame = +1

Query: 343 GVKPGTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSI 522
           GV   T++ S  W     E ++  YG++  ++ +   +   V +      + A   W+++
Sbjct: 72  GVAKSTVEASQPWLAAAAELLQVIYGWLVAAIAVAVENLPGVAKNTVEYTVEASQPWLAV 131

Query: 523 IVTL 534
              L
Sbjct: 132 AAKL 135


>11_03_0021 + 9010846-9011672,9011753-9013700
          Length = 924

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 510 SISCYQI*KCGCSENSNCTTSSQHQRTRDVSICCFYTF 397
           SIS ++I KC   EN++ +      R  DVS+ C  TF
Sbjct: 286 SISSWEILKCVLPENNSGSRIITTTRILDVSMICCSTF 323


>10_08_0333 - 16850267-16851802
          Length = 511

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -2

Query: 513 PSISCYQI*KCGCSENSNCTTSSQHQRTRDVSICCFYTFFHILWPKVRFLKSTWF 349
           PSI  +    CG   N +CT +S     RD   C    F++ +   V F    WF
Sbjct: 413 PSIYSHNSGLCGPPLNISCTNASVASDERDCRTCEDQYFYYCVMAGVVFGFWLWF 467


>07_03_0832 -
           21823518-21823826,21823920-21824070,21824148-21824385,
           21824469-21824679,21824789-21825009,21825590-21825697,
           21825813-21826142,21826740-21827050,21828969-21829651
          Length = 853

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 427 RCIHMLFLYVLSHIVAKGEIPEEYLVLPQSHSS 329
           RCIH+  L V  H   + +IP   L+L    SS
Sbjct: 780 RCIHIALLCVQDHAQERPDIPAVILMLSSDSSS 812


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,875,275
Number of Sequences: 37544
Number of extensions: 329232
Number of successful extensions: 971
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)