Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A05
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical pr...    97   6e-21
Z81118-9|CAM84694.1|  208|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   1.8  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   1.8  
U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical p...    28   4.2  
U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin ...    28   4.2  
U21323-2|AAM22051.1|  155|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL132864-4|CAB63393.2|  240|Caenorhabditis elegans Hypothetical ...    27   7.4  
AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical ...    27   7.4  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    27   9.8  

>U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical
           protein K11H12.8a protein.
          Length = 342

 Score = 97.5 bits (232), Expect = 6e-21
 Identities = 52/122 (42%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
 Frame = +1

Query: 217 RSQPTLRERLMAPAGPNAFXXXXXXXXXXXXXXXXXXCYYGSGVKPGT-LQESHLWPQYV 393
           R+ PTL+ERL+ P     F                   YYG   K  + LQ+S +WP YV
Sbjct: 50  RTGPTLKERLLGPTTGKPFVYGTYALAGASVFGVGALMYYGLVSKEQSILQKSAIWPSYV 109

Query: 394 KERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVTLGLMIGSGMVXRGM 573
           +ERI TTY Y+AGSL LTA S VA  R+ A++ L A  G MS+  T+  MI SGM+ R +
Sbjct: 110 RERISTTYAYLAGSLALTAVSGVAASRSAAIMRLTAGGGMMSLFGTMAAMIASGMLARSI 169

Query: 574 EY 579
           +Y
Sbjct: 170 DY 171


>Z81118-9|CAM84694.1|  208|Caenorhabditis elegans Hypothetical
           protein T10G3.8 protein.
          Length = 208

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 151 NFVPRNYVVRNYAREPRTRVATRSQPTLRERLMAP 255
           + VP+N V +N + +PR RV TR  P+   +L  P
Sbjct: 119 SLVPKNEVKKNASPQPRVRVITRKSPSPLRKLSTP 153


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 519  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 412
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 519  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 412
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 519  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 412
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 519  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 412
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical
           protein C18C4.9 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 411 CFYTFFHILWPKVRFLKSTWFYPR 340
           C + F H+  P++ F++ TW + R
Sbjct: 190 CIHQFLHLTQPQILFVRKTWNHAR 213


>U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin
           protein 6 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 309 SWTSCSVLLWLWGKTRYSSGISP 377
           SW S SVL WL G T   + ISP
Sbjct: 219 SWPSTSVLTWLDGSTSDYNNISP 241


>U21323-2|AAM22051.1|  155|Caenorhabditis elegans Hypothetical
           protein C45G9.6b protein.
          Length = 155

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 99  RSLGVQCNAXSKIASTTKFCTEKLCGQKLCTRTSNKG 209
           R  G  CN+ +   S   +CT  + G K+C  TSN G
Sbjct: 60  RDEGGYCNSNTDCRSGL-YCTASVNGVKICLSTSNGG 95


>U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical
           protein C45G9.6a protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 99  RSLGVQCNAXSKIASTTKFCTEKLCGQKLCTRTSNKG 209
           R  G  CN+ +   S   +CT  + G K+C  TSN G
Sbjct: 60  RDEGGYCNSNTDCRSGL-YCTASVNGVKICLSTSNGG 95


>AL132864-4|CAB63393.2|  240|Caenorhabditis elegans Hypothetical
           protein Y53H1A.2 protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 348 KTRYSSGISPLATICERTYKNNIWIHRGFFGADCW*CSCCFQN 476
           KT+++    P     ER  K++I +HR      C  C  C+Q+
Sbjct: 166 KTKHNCPECPKKYTSERRLKHHIVVHRNPDAYKCQKCGYCYQS 208


>AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical
           protein T05B4.8 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 186 CTRTSNKGRYTLTTHTSGETHGTCWTKCIQLGQGCISWSLCSWTSCSVLLWLWGK 350
           C RT  +   T T+ +   T GTC +        C SW+  +   C VL  L  K
Sbjct: 9   CQRTCGRCPSTTTSGSVTVTSGTCTSYIADSSSNCASWARTT-RFCVVLSLLLNK 62


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
           protein 10 protein.
          Length = 2302

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 397 LSHIVAKGEIPEEYLVLPQSHSSTEQLVQLQR 302
           L H+  + +IP E+++  Q HS   + V+L++
Sbjct: 28  LKHVQKRHDIPLEFIMNSQEHSDIRRSVRLEK 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,543,433
Number of Sequences: 27780
Number of extensions: 289602
Number of successful extensions: 873
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)