Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_A04
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 71 1e-12
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 59 4e-09
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 52 4e-07
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 43 3e-04
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 42 4e-04
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 31 1.4
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 30 2.5
01_06_1545 + 38144624-38145301 29 4.4
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 29 5.8
11_06_0513 + 24466131-24469487 28 7.6
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 70.9 bits (166), Expect = 1e-12
Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 4/229 (1%)
Frame = +1
Query: 133 PHIMLTLXKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFA 312
P + + KK D+ + Y K L T + GV T+ T ES VFG L ++
Sbjct: 3 PGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ-- 57
Query: 313 VKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTV 492
+K+ LT K N+++ L T +T+ + GLK L Q ++GKL+ + ++
Sbjct: 58 LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQYLHEYA 114
Query: 493 AVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDF--ALH 666
+N ++ L+ + P+V+++ V + GV FDT + F+K N AL + D +LH
Sbjct: 115 GINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLH 173
Query: 667 TNVDNGKDFGGSIYXKVS--DKLDCGVSMKWTAGSADTLFGVGAXYALD 807
N ++G S Y V G + + ++ G+ ++LD
Sbjct: 174 LN-NHGDTLIASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLD 221
>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 59.3 bits (137), Expect = 4e-09
Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 3/226 (1%)
Frame = +1
Query: 139 IMLTLXKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVK 318
+ + L D+ K Y+F K L T S SG+ T+ T + G + ++ K
Sbjct: 719 VAMLLFFAVQDLLYKDYNFDQ-KFSLTTTSNSGLGLTA--TGVKIDELFIGDIQTQH--K 773
Query: 319 DYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV 498
T K ++++ ++T +T+ D+ GLK + Q K+GKL + +D A+
Sbjct: 774 SGKTTVDVKIDSESRVSTTVTV-DEALTGLKTSFSFRVPDQ---KSGKLDLQYLHDHFAL 829
Query: 499 NTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDF-ALHTNV 675
N+ + L + P++++AA + AG FD+ A +K N + Y DF A
Sbjct: 830 NSTIGLT-STPLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLA 888
Query: 676 DNGKDFGGSIYXKVSDKLDCGVSMKWT--AGSADTLFGVGAXYALD 807
D G+ S ++ V+ + T + + F +G+ +A+D
Sbjct: 889 DKGETLKASYIHTFNETNGATVAAEVTHKLKTKENYFTIGSSHAID 934
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 52.4 bits (120), Expect = 4e-07
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 1/150 (0%)
Frame = +1
Query: 364 LATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDV 543
L T T+ D GLK L F Q K+ K + + + +N + L+ A P+V
Sbjct: 229 LITTFTVHDLGTPGLKGILSIPFPYQ---KSAKAEVQYLHPHAGLNAIVGLN-ANPLVSF 284
Query: 544 AAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYXKVS 720
+ V + G FDT F+K N L + + D ++N G S Y KVS
Sbjct: 285 SGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVS 344
Query: 721 DKLDCGVSMKWTAGSADTLFGVGAXYALDQ 810
G + + S + G +ALD+
Sbjct: 345 KTSAVGAELAHSFSSNENTLTFGTQHALDE 374
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 42.7 bits (96), Expect = 3e-04
Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 4/214 (1%)
Frame = +1
Query: 178 SKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTE-KWNT 354
S ++F V K + G + T+ ++ G +SS + K T + K +T
Sbjct: 54 SSSFYFQVIKAVKNISMQIGGDRGLTSTAVKKGGLYTLDVSSVYKYKS---TLVDVKVDT 110
Query: 355 DNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPV 534
++ ++T +T+ D + + VT P + GK++ + ++ + T + + PV
Sbjct: 111 ESNISTTLTVFDVLPSTKLVT--SVKLPDYNS--GKVEMQYFHENASFATAVGMK-PSPV 165
Query: 535 VDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDF-ALHTNVDNGKDFGGSIYX 711
V+ + QG G FDT KF+K + A+G D+ A D G S
Sbjct: 166 VEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTVKVSGVY 225
Query: 712 KVSDKLDCGVSMKWT--AGSADTLFGVGAXYALD 807
+ DK V + T + + VG Y +D
Sbjct: 226 HLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVD 259
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 42.3 bits (95), Expect = 4e-04
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 3/149 (2%)
Frame = +1
Query: 370 TDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAA 549
T IT +D +GLK + F QT GK + + +D ++ + L + P+V+++
Sbjct: 184 TTITTEDLGVSGLKQIVSLPFPYQTA---GKAELQYLHDYAGISLGVGLT-SKPLVNLSG 239
Query: 550 VLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYXKVSDK 726
V + G DT F+K + L + D A ++N G S Y V+ +
Sbjct: 240 VFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNNKGDSLTASYYHLVNKE 299
Query: 727 --LDCGVSMKWTAGSADTLFGVGAXYALD 807
G + + + + G +ALD
Sbjct: 300 SGTAAGAELTHSFSTKENTLSFGMQHALD 328
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -3
Query: 613 TLLFVYQTGCVHQPANPGSLVLL 545
TLLFVYQTG P PG L+LL
Sbjct: 693 TLLFVYQTGEDPPPPAPGGLLLL 715
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 202 FKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNT 363
F LDL S + G++F SG+ S + V L+ + A+KDY T+ N D T
Sbjct: 277 FHLDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFREAIKDYSTPSTKTLNRDLT 332
>01_06_1545 + 38144624-38145301
Length = 225
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = -2
Query: 569 QPW*FSTAATSTTGPAKSRSKL---VFTATVSLV---NEVFNFP--VLVPVCGAKVPSRV 414
QP +TAA+S++ P SRSK+ + TVS E N V+VP A P+RV
Sbjct: 29 QPQLAATAASSSSSPFSSRSKIGKDIIDKTVSFTLYQQETMNRTGYVVVPGVDAPAPARV 88
Query: 413 TLRPA 399
+ A
Sbjct: 89 VVSDA 93
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 625 CSWRTLLFVYQTGCVHQPANPGSLVLLQRLQLD 527
CSW + + TG V P+ G L LLQ +QL+
Sbjct: 34 CSWDSGIICSDTGHVPIPSALGDLPLLQTIQLE 66
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -3
Query: 682 HCLRLCGEQSHQIGNLEQS-CSWRTLLFVYQTGC---VHQPANPGSLVLLQRLQLD 527
H LR IG L S CS R L + + C P N GS+ LQRL L+
Sbjct: 686 HSLRYLNLSQTDIGKLPDSICSLRLLQTLQLSRCEKLTKLPQNIGSVTSLQRLDLE 741
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,592,788
Number of Sequences: 37544
Number of extensions: 476883
Number of successful extensions: 1282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -