Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_A01
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   305   2e-83
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    31   0.61 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.61 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.61 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.61 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    31   0.61 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    31   0.61 
U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    29   4.3  
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    28   7.6  
AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  305 bits (749), Expect = 2e-83
 Identities = 141/208 (67%), Positives = 169/208 (81%)
 Frame = +3

Query: 66  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 245
           MGISRD WHKR  TG  +    KKRK+ELGRPAANT++G  R+  VR+RGGN KYRALRL
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 246 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 425
           D+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61  DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120

Query: 426 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPG 605
           L RKK AKL+E + AI+NKKRS  T +KY  RQ+ A V+  L EQF+TGRLLA ++S PG
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPG 180

Query: 606 QCGRADGYILXGKELEFYLRKIKSKRAK 689
           Q G+A+GYIL GKEL+FYLRKI++K+AK
Sbjct: 181 QVGQANGYILEGKELDFYLRKIRAKKAK 208


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 234 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 338
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 234 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 338
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 234 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 338
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 234 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 338
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 234 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 338
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 234 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 338
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 432 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXE 557
           +K G     A++  I K+++ KTA+KY  +++LA++E  L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 337 TNSLLDALYTTSMIRVLRV 281
           TNSL+DA+YTT+ +  L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151


>AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical
           protein Y116A8A.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 276 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 398
           CS +    I   ++A+NN ++  KT   N I     TPF Q
Sbjct: 51  CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,009,718
Number of Sequences: 27780
Number of extensions: 335008
Number of successful extensions: 1016
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)