Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P21
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.0  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    26   5.0  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.6  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.7  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   8.7  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 328 LFFSCILLYTRIFLHFYYFILHI*RHSHYFIQLFIYYTIIDLISFIVNLV 477
           L    ++LY++  L F++       +S  F  LF + T+  L+  I  L+
Sbjct: 26  LLIMFLILYSQEILSFFFMCSKFSMNSLKFCVLFSFKTVYSLLKLIKTLI 75


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +1

Query: 400 RHSHYFIQLFIYYTIIDLISFIVNLV*AINVLGNTYYRKIEQSLKKNW 543
           RH H  +   ++Y II+++S +++       L +T+Y K+ +  + NW
Sbjct: 38  RHMHVILLSALFYQIINILSPVIS-----RHL-STHYAKLSKKTRLNW 79


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 295 RILLHNR*TFYLFFSCILLYTRIFLHF 375
           R LLH R     FF+C ++ + ++ H+
Sbjct: 219 RNLLHKRLWISFFFACFVVLSLVYFHY 245


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -3

Query: 266 CFL--ICKIYCILASAQNLLQRL 204
           CF+  +C++YCIL SA +  Q +
Sbjct: 38  CFVSVLCRLYCILMSAASATQTI 60


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 259 KKHLLVYGDTN*RILLHN 312
           K HL VYG T   I+LHN
Sbjct: 174 KNHLEVYGRTTYNIVLHN 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,621
Number of Sequences: 5004
Number of extensions: 43785
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)