Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_P20
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0030 - 25060711-25060830,25060981-25061130,25061473-250615... 72 3e-13
01_06_0869 - 32591669-32591794,32591923-32592075,32592293-325923... 67 1e-11
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675... 28 5.0
04_04_1086 - 30725010-30725138,30725748-30725786,30725876-307259... 27 8.7
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 27 8.7
>05_06_0030 -
25060711-25060830,25060981-25061130,25061473-25061544,
25061631-25061761,25062487-25062635,25062998-25063239
Length = 287
Score = 72.1 bits (169), Expect = 3e-13
Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 10/146 (6%)
Frame = -3
Query: 525 LYMEGRIVQXLECRPXDD--VTYYKLKSESIKKASMPQRQVQQLDRIVQNFXPVSDHPHN 352
L EG++ + +P D V Y KL E +K+ + R+VQ ++ + P+
Sbjct: 133 LSCEGKVEHKFDMKPHSDNLVNYGKLCRERTQKSMIKTRKVQVIEDHRMSLIPLPGMVGL 192
Query: 351 IDY--QERKK------AEGKKARDDKEAVLNMLFAAFEKHQYYNIKDLXKITRQPIVYLK 196
I +E+KK ++ K+ R D+ + N++F FE+ + +K L + T QP +LK
Sbjct: 193 IPSGSKEKKKQTPTKPSDAKRIRRDRRELENIIFKLFERQPNWALKALVQETDQPEQFLK 252
Query: 195 EILKEVCNYNLRNPHKNMWELKPXYR 118
EIL ++C YN R P++ ELKP Y+
Sbjct: 253 EILNDLCFYNKRGPNQGTHELKPEYK 278
>01_06_0869 -
32591669-32591794,32591923-32592075,32592293-32592367,
32592467-32592597,32593788-32593896,32594745-32594936
Length = 261
Score = 66.9 bits (156), Expect = 1e-11
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Frame = -3
Query: 525 LYMEGRIVQXLECRPXDD--VTYYKLKSESIKKASMPQRQVQQL---DRIVQNFXP---- 373
L EG++ + P D V Y KL E +K+ + R++ L + + P
Sbjct: 103 LSCEGKVGHKFDMEPHSDNLVNYGKLCRERTQKSMIKNRKLMVLANDNGMSMRPLPGLVG 162
Query: 372 -VSDHPHNIDYQER--KKAEGKKARDDKEAVLNMLFAAFEKHQYYNIKDLXKITRQPIVY 202
+S P + + K ++ K+ R D+ + N+LF FE+ +++K+L + T QP +
Sbjct: 163 LMSSGPKQKEKKPLPVKPSDMKRTRRDRRELENILFKLFERQPNWSLKNLMQETDQPEQF 222
Query: 201 LKEILKEVCNYNLRNPHKNMWELKPXYRHYKQD 103
LKEIL ++C YN R P++ ELKP Y+ +D
Sbjct: 223 LKEILNDLCFYNKRGPNQGTHELKPEYKKSTED 255
>05_02_0115 -
6758540-6758771,6759417-6759524,6759670-6759840,
6759967-6760077,6760562-6760663,6761139-6761366,
6761568-6761696,6761753-6761869,6761955-6762301,
6762377-6762931,6763104-6763182,6763429-6763595,
6763857-6764075,6764956-6765139,6765175-6765371,
6765717-6766035,6766379-6766538,6767642-6767794,
6767911-6768013
Length = 1226
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = -3
Query: 321 GKKARDDKEAVLNMLFAAFEKHQYYNIKDLXKITRQPIVYLKEILKEVCNYNLRNPHKNM 142
G DD AV+ A +H N+KDL + R+ +E+ K+VC + + +
Sbjct: 14 GGAEEDDGGAVVGY---AKGEHCLDNLKDLQRFLRRDDPQRREVFKQVCKWKIASR---- 66
Query: 141 WELKPXYRHYKQD 103
+L P +Y+ D
Sbjct: 67 -DLVPIIENYQAD 78
>04_04_1086 -
30725010-30725138,30725748-30725786,30725876-30725998,
30726953-30727015,30727540-30727620,30727998-30728088,
30728295-30728366,30728452-30728552,30728681-30728779,
30729132-30729329,30730792-30730824,30731084-30731192,
30732088-30732149,30732388-30732468,30732549-30732704,
30732812-30732976,30733351-30733413,30733492-30733545,
30733574-30733612,30733727-30733783,30733862-30733930,
30734022-30734135,30734216-30734284,30734821-30734927,
30735207-30735363
Length = 776
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -3
Query: 447 ESIKKASMPQRQVQQLDRIVQNFXPVSDHPHNIDYQERKKAEGKKARDDKEAVLNMLFAA 268
+ +KK + + + ++ + DH I+ +++KK E + V + LF
Sbjct: 121 DQVKKGESLEARASEAEKSLLELTQKLDHAEKINMEQKKKIE--ELNHSLRQVQDKLFEV 178
Query: 267 FEKHQYYNIKDLXKITRQPIVYLKEILK 184
E+ ++L KI R P++Y + K
Sbjct: 179 -EREAKLKAEELMKI-RPPLLYSVHLAK 204
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = -3
Query: 348 DYQERKKAEGKKARDDKEAVLNML 277
+Y+ERKKAE K+ +D +A L++L
Sbjct: 83 EYRERKKAESKRVSED-DATLSVL 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,549,419
Number of Sequences: 37544
Number of extensions: 240538
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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