Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P20
         (605 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59745-1|CAA42419.1|  249|Homo sapiens RAP30 protein.                 175   1e-43
X16901-1|CAA34775.1|  249|Homo sapiens 30kb subunit of RAB30 /74...   175   1e-43
BT019525-1|AAV38332.1|  249|Homo sapiens general transcription f...   175   1e-43
BC001771-1|AAH01771.1|  249|Homo sapiens general transcription f...   175   1e-43
AL138963-1|CAH72032.1|  249|Homo sapiens general transcription f...   175   1e-43
AL138693-1|CAH72459.1|  249|Homo sapiens general transcription f...   175   1e-43
M20020-1|AAA60288.1|  249|Homo sapiens RPS6 protein.                   29   9.6  

>X59745-1|CAA42419.1|  249|Homo sapiens RAP30 protein.
          Length = 249

 Score =  175 bits (426), Expect = 1e-43
 Identities = 79/140 (56%), Positives = 106/140 (75%), Gaps = 1/140 (0%)
 Frame = -3

Query: 525 LYMEGRIVQXLECRPXDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFXPVSDHPHNI 349
           L +EG +VQ  ECRP     Y +LK   I+++S P R  QQLD++V  N+ PV++H +NI
Sbjct: 104 LSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNI 163

Query: 348 DYQERKKAEGKKARDDKEAVLNMLFAAFEKHQYYNIKDLXKITRQPIVYLKEILKEVCNY 169
           +Y+ +KK +GK+AR DK+ VL+MLF+AFEKHQYYN+KDL  IT+QP+VYLKEILKE+   
Sbjct: 164 EYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQ 223

Query: 168 NLRNPHKNMWELKPXYRHYK 109
           N++  HKN WELKP YRHY+
Sbjct: 224 NVKGIHKNTWELKPEYRHYQ 243


>X16901-1|CAA34775.1|  249|Homo sapiens 30kb subunit of RAB30 /74
           protein.
          Length = 249

 Score =  175 bits (426), Expect = 1e-43
 Identities = 79/140 (56%), Positives = 106/140 (75%), Gaps = 1/140 (0%)
 Frame = -3

Query: 525 LYMEGRIVQXLECRPXDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFXPVSDHPHNI 349
           L +EG +VQ  ECRP     Y +LK   I+++S P R  QQLD++V  N+ PV++H +NI
Sbjct: 104 LSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNI 163

Query: 348 DYQERKKAEGKKARDDKEAVLNMLFAAFEKHQYYNIKDLXKITRQPIVYLKEILKEVCNY 169
           +Y+ +KK +GK+AR DK+ VL+MLF+AFEKHQYYN+KDL  IT+QP+VYLKEILKE+   
Sbjct: 164 EYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQ 223

Query: 168 NLRNPHKNMWELKPXYRHYK 109
           N++  HKN WELKP YRHY+
Sbjct: 224 NVKGIHKNTWELKPEYRHYQ 243


>BT019525-1|AAV38332.1|  249|Homo sapiens general transcription
           factor IIF, polypeptide 2, 30kDa protein.
          Length = 249

 Score =  175 bits (426), Expect = 1e-43
 Identities = 79/140 (56%), Positives = 106/140 (75%), Gaps = 1/140 (0%)
 Frame = -3

Query: 525 LYMEGRIVQXLECRPXDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFXPVSDHPHNI 349
           L +EG +VQ  ECRP     Y +LK   I+++S P R  QQLD++V  N+ PV++H +NI
Sbjct: 104 LSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNI 163

Query: 348 DYQERKKAEGKKARDDKEAVLNMLFAAFEKHQYYNIKDLXKITRQPIVYLKEILKEVCNY 169
           +Y+ +KK +GK+AR DK+ VL+MLF+AFEKHQYYN+KDL  IT+QP+VYLKEILKE+   
Sbjct: 164 EYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQ 223

Query: 168 NLRNPHKNMWELKPXYRHYK 109
           N++  HKN WELKP YRHY+
Sbjct: 224 NVKGIHKNTWELKPEYRHYQ 243


>BC001771-1|AAH01771.1|  249|Homo sapiens general transcription
           factor IIF, polypeptide 2, 30kDa protein.
          Length = 249

 Score =  175 bits (426), Expect = 1e-43
 Identities = 79/140 (56%), Positives = 106/140 (75%), Gaps = 1/140 (0%)
 Frame = -3

Query: 525 LYMEGRIVQXLECRPXDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFXPVSDHPHNI 349
           L +EG +VQ  ECRP     Y +LK   I+++S P R  QQLD++V  N+ PV++H +NI
Sbjct: 104 LSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNI 163

Query: 348 DYQERKKAEGKKARDDKEAVLNMLFAAFEKHQYYNIKDLXKITRQPIVYLKEILKEVCNY 169
           +Y+ +KK +GK+AR DK+ VL+MLF+AFEKHQYYN+KDL  IT+QP+VYLKEILKE+   
Sbjct: 164 EYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQ 223

Query: 168 NLRNPHKNMWELKPXYRHYK 109
           N++  HKN WELKP YRHY+
Sbjct: 224 NVKGIHKNTWELKPEYRHYQ 243


>AL138963-1|CAH72032.1|  249|Homo sapiens general transcription
           factor IIF, polypeptide 2, 30kDa protein.
          Length = 249

 Score =  175 bits (426), Expect = 1e-43
 Identities = 79/140 (56%), Positives = 106/140 (75%), Gaps = 1/140 (0%)
 Frame = -3

Query: 525 LYMEGRIVQXLECRPXDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFXPVSDHPHNI 349
           L +EG +VQ  ECRP     Y +LK   I+++S P R  QQLD++V  N+ PV++H +NI
Sbjct: 104 LSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNI 163

Query: 348 DYQERKKAEGKKARDDKEAVLNMLFAAFEKHQYYNIKDLXKITRQPIVYLKEILKEVCNY 169
           +Y+ +KK +GK+AR DK+ VL+MLF+AFEKHQYYN+KDL  IT+QP+VYLKEILKE+   
Sbjct: 164 EYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQ 223

Query: 168 NLRNPHKNMWELKPXYRHYK 109
           N++  HKN WELKP YRHY+
Sbjct: 224 NVKGIHKNTWELKPEYRHYQ 243


>AL138693-1|CAH72459.1|  249|Homo sapiens general transcription
           factor IIF, polypeptide 2, 30kDa protein.
          Length = 249

 Score =  175 bits (426), Expect = 1e-43
 Identities = 79/140 (56%), Positives = 106/140 (75%), Gaps = 1/140 (0%)
 Frame = -3

Query: 525 LYMEGRIVQXLECRPXDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFXPVSDHPHNI 349
           L +EG +VQ  ECRP     Y +LK   I+++S P R  QQLD++V  N+ PV++H +NI
Sbjct: 104 LSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNI 163

Query: 348 DYQERKKAEGKKARDDKEAVLNMLFAAFEKHQYYNIKDLXKITRQPIVYLKEILKEVCNY 169
           +Y+ +KK +GK+AR DK+ VL+MLF+AFEKHQYYN+KDL  IT+QP+VYLKEILKE+   
Sbjct: 164 EYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQ 223

Query: 168 NLRNPHKNMWELKPXYRHYK 109
           N++  HKN WELKP YRHY+
Sbjct: 224 NVKGIHKNTWELKPEYRHYQ 243


>M20020-1|AAA60288.1|  249|Homo sapiens RPS6 protein.
          Length = 249

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 23/104 (22%), Positives = 40/104 (38%)
 Frame = -3

Query: 564 PTNTDSVVPETXNLYMEGRIVQXLECRPXDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ 385
           P  TD+ VP         RI +       DDV  Y ++    K+   P+ +  ++ R+V 
Sbjct: 122 PGLTDTTVPRRLGPKRASRIRKRFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVT 181

Query: 384 NFXPVSDHPHNIDYQERKKAEGKKARDDKEAVLNMLFAAFEKHQ 253
                         Q+R K   ++A +  + +   +  A EK Q
Sbjct: 182 PRVLQHKRRRIALKQQRTKKNKEEAAEYAKLLAKRMKEAKEKRQ 225


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,443,994
Number of Sequences: 237096
Number of extensions: 1488586
Number of successful extensions: 2922
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2916
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)