Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P16
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    27   2.0  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    27   2.7  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    27   3.5  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.5  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    26   4.7  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    26   4.7  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.2  

>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = -2

Query: 716 TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAA 537
           T+  A+  E   ++  S+   + SA   A I N+    DL PN + +   +      +  
Sbjct: 42  TDKNASNQEQGTKKLESSVGEQESATKRAKIENLKDNQDLIPNNDVNGIHINNSAVADTK 101

Query: 536 DAPKLADNPVDE 501
             PK+ D   D+
Sbjct: 102 HKPKIGDIAADD 113


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 189 VGSGARVNVFAASSGRVSKTV 251
           V SGARV ++ ASS  V KT+
Sbjct: 57  VTSGARVQIYGASSRSVKKTI 77


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -2

Query: 695 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPNVESDAAAVPEIKTPEA 540
           A   K+ +PS  +   +A   +  PN VK +  D+ P   +      +I  PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = -2

Query: 707 QATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAP 528
           Q T+A       PS      +A S   +P     I+   N+  +A ++PE   P A  + 
Sbjct: 362 QDTLASNHVPSAPSNESVSSAAPSKIPVPEEAS-INEHSNITDEAVSLPEPVYPNAPTSA 420

Query: 527 KLADNPV--DEDKPAD 486
               NP   DE +P +
Sbjct: 421 VSVHNPTISDEAEPTE 436


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 23/64 (35%), Positives = 31/64 (48%)
 Frame = -2

Query: 695 AEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLAD 516
           +E+SK  KP+ TD            N  K+I++A    S  A  P+  TP AA AP  A 
Sbjct: 44  SEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKATP-AAVAPVEAT 92

Query: 515 NPVD 504
           + VD
Sbjct: 93  SAVD 96


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 587 VESDAAAVPEI-KTPEAADAPKLADNPVDEDKPAD 486
           V SDA  V +  KT E AD     +  +DE KPAD
Sbjct: 297 VNSDANVVEQSEKTTEDADEEPETEENLDEFKPAD 331


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 343 PQKVRNHLTNPNLKKTNLR*TAEALS 266
           PQK+ NHL N  +K +N+    E +S
Sbjct: 538 PQKLSNHLYNLCVKSSNVNYARECIS 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,997
Number of Sequences: 5004
Number of extensions: 28782
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)