Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P15
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.8  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   3.8  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   3.8  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   5.1  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    26   5.1  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    26   6.7  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   8.9  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   8.9  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   8.9  

>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 278 CKILNMQFFFFVSQTKIYTL*GSNV 204
           CK++  QFF  + +T  YTL  +NV
Sbjct: 278 CKVIVYQFFLRIPETDTYTLVVNNV 302


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 406 HLGST--WRPKISKRSTTKHKNGL 341
           H GST  W    + RST+KH+N L
Sbjct: 417 HAGSTQEWHSHTTPRSTSKHENNL 440


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 278 CKILNMQFFFFVSQTKIYTL*GSNV 204
           CK++  QFF  + +T  YTL  +NV
Sbjct: 278 CKVIVYQFFLRIPETDTYTLVVNNV 302


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 758 DAQKNLRKXERRIKELTFQAEEDRKNHERMQDLVDKLQQKIKTYKRQ 618
           DA+ N  K  +R KE+  Q  + RK+   +  L  K+++K K  +++
Sbjct: 86  DAEDNEAKKMKREKEILRQQRQKRKS--ELTQLSQKVKEKFKKMRKK 130


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 107 TCAREHRRDTPPTPAPHTR 51
           TCA+E R+ T P P  H R
Sbjct: 174 TCAKELRKKTVPCPVQHCR 192


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 719 KELTFQAEEDRKNHERMQDLVDKLQQK 639
           K++TF+AEE RK  E+  +L ++  +K
Sbjct: 125 KQVTFKAEERRKREEKSSNLDEEELRK 151


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 197 KGYFVTLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTPPTPA 63
           KG   +L   I   Y+R   I S S      C R++ R+ P  PA
Sbjct: 21  KGLDSSLRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPA 65


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 208 LDP*SVYIFVWLTKKKNCIFS 270
           LDP   YIFV  T   NC+F+
Sbjct: 102 LDPSGHYIFVTTTAGDNCLFT 122


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 281  NCKILNMQFFFFVSQTKIYTL*GSNV 204
            NCK +  QFFF V  T  Y L   NV
Sbjct: 1092 NCKAIVYQFFFRVPYTDTYELNVYNV 1117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,014
Number of Sequences: 5004
Number of extensions: 44127
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)