Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P15
         (759 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    26   1.5  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   1.9  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   3.3  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    24   4.4  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    24   5.9  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   7.7  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 758 DAQKNLR-KXERRIKELTFQAEEDRKNHERMQDLVDKLQQKIKTYKRQ 618
           D  +N R + E  IKEL  +  E R+    +Q+ + K QQ     KRQ
Sbjct: 629 DKIRNQRGQIENSIKELQERCAELREQKRDLQEQLSKYQQTKMKVKRQ 676


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 717 GAHLPGRRRPQEPRTYAGPRR*TAAEDQDIQEADRG 610
           G   PG   P+ PR Y GP+     +  D ++ +RG
Sbjct: 406 GEGRPGAPGPKGPRGYEGPQGPKGMDGFDGEKGERG 441


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 752  QKNLRKXERRIKELTFQAEEDRKNHERMQDLVDKLQQKI 636
            QK L    ++ KE   + EED K  E+     + L+QKI
Sbjct: 898  QKELESWIQKEKEAQEKLEEDGKRMEKWATKENMLRQKI 936


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 452 PQRSRPALADGFGTFPP 402
           P  SR A ADG G+ PP
Sbjct: 769 PSPSRSAFADGIGSPPP 785


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
            channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 513  HQQVPRQGTRGICSERSQPGAPALAP 436
            +++VP    +GICS+R  P   A  P
Sbjct: 993  YRRVPLMDYQGICSDRDNPYTGAGEP 1018


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 513  HQQVPRQGTRGICSERSQPGAPALAPRP 430
            HQQ  R+G  G   ER +   P LA  P
Sbjct: 1104 HQQDERRGVEGGDIERGESVYPELASSP 1131


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,108
Number of Sequences: 2352
Number of extensions: 11857
Number of successful extensions: 35
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78586767
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)