Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P14
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   3.9  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.9  
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c...    26   5.2  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   5.2  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   5.2  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    26   5.2  

>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 128 IHKDFPQDLKDCCYSCLKGSTEXLPRERNCDTKXVFV 18
           + K+ P DLKD  Y+  +  T  L   R  D +   +
Sbjct: 528 LEKNLPSDLKDQAYTIFESLTVQLSYTRGTDARNAII 564


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 417 LLARLAGAEADREMGPQPVLHPRLVSVSSQTDLPLGQAPDQAVS 286
           L A +  A    ++ P PV   +  ++  QTDLPL    D  VS
Sbjct: 297 LQAPIPRALKQHKLPPIPVPEVQTTNIGYQTDLPLQNPNDNLVS 340


>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 436 EIGRDGLGLKISAQGLRRSPPTLYSGAPVPQW 531
           E+G  G+ +K +A G+R S   L S A   +W
Sbjct: 124 EVGIHGVSIKFTANGIRYSSTYLPSVAAEQRW 155


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 469 SAQGLRRSPPTLYSGAPVP 525
           S +GL++ P TLY G P+P
Sbjct: 53  SLRGLQKLPRTLYFGLPLP 71


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 632 KDRAYPITDLTAPLIDPLK--PKSLKGIEYEPDN 537
           K RAYP  D   P++D L+    +L+  EY   N
Sbjct: 379 KYRAYPTYDFACPIVDSLEGVTHALRTTEYRDRN 412


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 294 PDRVLVPEEGPFDWRQIRVADVGRAAVPSRDRLQ 395
           P  V+  EEGP   +Q RVADV +  V SR+ L+
Sbjct: 259 PKGVIELEEGPDGKKQARVADVRKDTV-SRECLR 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,827
Number of Sequences: 5004
Number of extensions: 41764
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)