Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P14
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242...    29   3.1  
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661...    28   5.4  
10_06_0158 - 11320173-11320279,11320347-11321038,11321283-113215...    28   7.1  
05_07_0091 + 27640863-27641788,27643186-27643444,27643993-276440...    28   7.1  
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159...    28   7.1  

>06_01_0336 +
           2427017-2427121,2427585-2427662,2427889-2427960,
           2428105-2428671,2428822-2428935,2431308-2432246
          Length = 624

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 408 RLAGAEADREMGPQPVLHPRLVSVSSQTDLP 316
           R  GAEA+ ++ PQP +    VSV ++ D P
Sbjct: 243 RSVGAEAEDDIAPQPQVKKARVSVRARCDAP 273


>03_02_0232 +
           6614784-6614882,6616145-6616477,6616708-6616967,
           6617328-6617469,6617567-6617938,6618056-6618187,
           6618907-6619035,6619125-6621188
          Length = 1176

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 128 IHKDFPQDLKDCCY 87
           + KDFPQD   CCY
Sbjct: 635 LRKDFPQDQSSCCY 648


>10_06_0158 -
           11320173-11320279,11320347-11321038,11321283-11321509,
           11321521-11321611,11321839-11322125,11322428-11322523
          Length = 499

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 523 EQVHHCTALADYDAGLGLIFSTRARLYRSLQSL 425
           +++H    +  Y  GLG++   R R Y+S++ +
Sbjct: 8   DEIHKYVYVVGYSLGLGVVIGIRTRWYQSVRQI 40


>05_07_0091 +
           27640863-27641788,27643186-27643444,27643993-27644070,
           27644324-27644398
          Length = 445

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +1

Query: 490 SPPTLYSGAPVPQWGLLSGSYSMPFRLLGLR 582
           SP  LYS + V   GLLS   SM F LL  R
Sbjct: 29  SPKLLYSQSYVAMRGLLSSLVSMDFALLSSR 59


>02_05_1041 -
           33713561-33714564,33714844-33714904,33715640-33715951,
           33716780-33716917
          Length = 504

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
 Frame = +1

Query: 346 ESRM*DGLRSHLAIGFSSGQSCQKG--SRVIAEIG-RDGLGLKISAQGL 483
           ES+   G+++  AI F+  +   +G  S+++A++G R+G+GL +S QG+
Sbjct: 283 ESKNLSGVQTETAI-FAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGM 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,312,159
Number of Sequences: 37544
Number of extensions: 328653
Number of successful extensions: 980
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)