Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P09
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   240   1e-64
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   240   1e-64
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    30   0.27 
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    28   1.4  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   4.4  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   5.8  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  240 bits (588), Expect = 1e-64
 Identities = 107/158 (67%), Positives = 139/158 (87%)
 Frame = -2

Query: 491 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 312
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 311 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 132
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 131 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSG 18
           +A+ LSG+VKEILGTA SVGCTV+G+ PHD+  +I++G
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNG 158


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  240 bits (588), Expect = 1e-64
 Identities = 107/158 (67%), Positives = 139/158 (87%)
 Frame = -2

Query: 491 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 312
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 311 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 132
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 131 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSG 18
           +A+ LSG+VKEILGTA SVGCTV+G+ PHD+  +I++G
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNG 158


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 22   LLMSSIRSCGGLPSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAIPI-TSSREMLPL 192
            L++SS R    LPS + P    V R+  ++PE     DLFL I A+ + TSS+ +LPL
Sbjct: 1455 LMLSSPRDFF-LPS-LPPLIDLVKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = -2

Query: 323 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIM 144
           K + Q ++ N +    V  ++  L    LKE  +D++K ++       S   +   A+  
Sbjct: 23  KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82

Query: 143 RNRSMARYLSGSVKEI 96
           RNR     L  +V  I
Sbjct: 83  RNRKARENLKVNVSSI 98


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 210 LFTITRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 317
           +FT+ R  LK   +   CR N +  GLS   C  +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 58  PSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAIPITSSREMLPLCLIF 204
           P+  +P   + PR   T  +R   + + +     P TSSR  LPL +++
Sbjct: 213 PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,535
Number of Sequences: 5004
Number of extensions: 58845
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)