Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P09
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                        238   3e-63
02_05_0416 + 28791512-28792012                                        235   3e-62
11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858...    32   0.37 
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414           29   2.6  
03_06_0776 - 36176390-36177589                                         29   4.5  
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545...    28   7.9  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  238 bits (583), Expect = 3e-63
 Identities = 113/159 (71%), Positives = 138/159 (86%), Gaps = 1/159 (0%)
 Frame = -2

Query: 491 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 315
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 314 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 135
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA+IMRNR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120

Query: 134 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSG 18
           SMA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDG 159


>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  235 bits (574), Expect = 3e-62
 Identities = 111/159 (69%), Positives = 137/159 (86%), Gaps = 1/159 (0%)
 Frame = -2

Query: 491 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 315
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 314 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 135
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA++MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPR 120

Query: 134 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSG 18
           SMA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDG 159


>11_04_0079 -
           13284869-13284929,13285518-13285639,13285749-13285820,
           13286048-13286200,13289510-13289709,13289745-13289947,
           13289991-13290181
          Length = 333

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 13  QAPLLMSSIRSCGGLPSTVHPTDCAVPRISF 105
           QAPL   S+RSCG L   + P + ++PR+ +
Sbjct: 120 QAPLSPKSVRSCGPLKLVIEPYNGSLPRLHY 150


>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
          Length = 522

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 335 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 207
           W    + V   V +    + V+P+A A +IRA+ + P  R++Q
Sbjct: 33  WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75


>03_06_0776 - 36176390-36177589
          Length = 399

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -2

Query: 209 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 120
           +K+I++ G++ LE    + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142


>11_01_0669 -
           5454116-5454153,5454569-5454770,5454865-5455029,
           5455278-5456183
          Length = 436

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 494 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 366
           K+P + F  N +KIV ++C G EV         +G  G+  +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,740,003
Number of Sequences: 37544
Number of extensions: 421341
Number of successful extensions: 1129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)