Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P06
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   1.7  
SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb...    25   2.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   3.8  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    24   5.1  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    24   5.1  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    24   5.1  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    24   6.7  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    23   8.8  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    23   8.8  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 117  SPAAVPITYSALPSATYYVR*NKIISR 37
            SP A+P+TYS    A++    NK++S+
Sbjct: 1109 SPLALPMTYSPTERASFLSYKNKVMSQ 1135


>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 156 TPGLVPPVISPYASPAAVPITYSALPSA 73
           TP +   V + +++PA+ P+T ++ PS+
Sbjct: 74  TPTMAEQVQTSFSNPASTPLTQTSSPSS 101


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 183  PYTGLDYVYTPGLVPPVISPYASPAAVPITYSALP 79
            P  G+  V  P   PPV +P A    VP+  +  P
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -1

Query: 296 YSKQTTCPTNXSFSSLCW-PCLWPLQALRQPQNQHRNFFHTQAW 168
           + +  +  TN       W P  +  +  R P N  R++F T AW
Sbjct: 119 FKESRSSKTNPKRDWYFWKPARYNEKGERLPPNNWRSYFDTSAW 162


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 174 GLDYVYTPGLVPPVISPYASPAAVPITYSALPSAT--YYVR*NKII 43
           G  Y   PG + PV+S    P  + +   A P     Y +R +++I
Sbjct: 178 GYSYAPVPGKLSPVVSVQIHPKDLGVILIAYPDGVVLYSIRTDEVI 223


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
 Frame = +1

Query: 148 AGCIDVVQ---ACVWKKLRCWFWGCLRA---WSG 231
           AGC D +    + VW + +   WGC++A   W+G
Sbjct: 482 AGCNDFLTKPVSLVWLEKKITEWGCMQALIDWNG 515


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 260 FSSLCWPCLWPL 225
           F  LCW CLW +
Sbjct: 121 FPFLCWICLWSM 132


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 218  LRQPQNQHRNFFH 180
            LR PQ +H++F+H
Sbjct: 1190 LRVPQKKHKHFYH 1202


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 189 LLPYTGLDYVYTPGLVPP 136
           LLPY  L +V  P L+PP
Sbjct: 560 LLPYDHLLHVRQPRLIPP 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,163,875
Number of Sequences: 5004
Number of extensions: 18561
Number of successful extensions: 67
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)