Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_P06
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1113 - 24068441-24068923 28 1.5
06_03_1058 + 27254195-27254382,27255041-27255116,27255254-272554... 27 3.5
06_01_0486 - 3455030-3455770 27 3.5
11_03_0044 - 9198016-9199143,9199579-9199674,9199771-9199846,920... 27 4.6
07_03_0437 + 18197454-18197516,18198025-18198078,18198557-18198787 27 4.6
01_06_1377 + 36764461-36765339 27 4.6
11_03_0107 + 10084234-10084348,10084830-10084834,10085351-100858... 26 6.1
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431... 26 6.1
09_06_0308 - 22199389-22199451,22199604-22199924,22200178-222004... 26 8.0
05_06_0093 - 25468271-25468320,25468393-25468433,25468592-254686... 26 8.0
>07_03_1113 - 24068441-24068923
Length = 160
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 184 KKLRCWFWGCLRAWSGQRHGQQSE 255
KK R W WGC G HG++SE
Sbjct: 63 KKQRLWRWGC----GGSPHGEESE 82
>06_03_1058 +
27254195-27254382,27255041-27255116,27255254-27255418,
27255580-27255671,27255713-27255754,27256342-27256387,
27258456-27258683
Length = 278
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 160 DVVQACVWKKLRCWFWGCLRAWSGQRHG-QQSEEN 261
+ ++ C+ + + C WG L+ WS G QQ EN
Sbjct: 173 ECIRPCMSRTISCAAWGELQLWSSLPVGEQQMSEN 207
>06_01_0486 - 3455030-3455770
Length = 246
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -3
Query: 183 PYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSAT 70
PY Y P +PP PY P P T +P T
Sbjct: 91 PYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPT 128
>11_03_0044 -
9198016-9199143,9199579-9199674,9199771-9199846,
9200330-9200547,9200703-9200918,9201336-9201521,
9201607-9201708,9201828-9202495,9203248-9203314
Length = 918
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 180 YTGLDYVYTPGLVPPVIS 127
Y GL V+TP L+ PVIS
Sbjct: 78 YVGLSTVHTPALLTPVIS 95
>07_03_0437 + 18197454-18197516,18198025-18198078,18198557-18198787
Length = 115
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 169 QACVWKKLRCWFWG 210
Q V +K RCWFWG
Sbjct: 21 QGVVKEKNRCWFWG 34
>01_06_1377 + 36764461-36765339
Length = 292
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 153 PGLVPPVISPYASPAAVPITYSALPSATY 67
P PP SPY P P YSA P Y
Sbjct: 160 PQYPPPSSSPYYFPPPPPPAYSAPPPPQY 188
>11_03_0107 +
10084234-10084348,10084830-10084834,10085351-10085803,
10086143-10086267,10087282-10087345,10087452-10087508,
10088475-10088485,10089923-10090802
Length = 569
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Frame = -3
Query: 177 TGLDYV------YTPGLVPPVISPYASPAAVPIT 94
TGL Y+ YTP L PP +P A+ AA T
Sbjct: 38 TGLGYIVLALQAYTPSLHPPPCNPAATTAAASTT 71
>01_07_0359 -
43042675-43042758,43042956-43043024,43043099-43043159,
43043260-43043768,43044545-43045153,43045697-43045972,
43046581-43046769,43047006-43047116,43047621-43047908,
43047990-43048041,43048648-43048824,43049249-43049314,
43049675-43049929,43050071-43050577,43050807-43050886,
43050974-43051207
Length = 1188
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = -3
Query: 129 SPYASPAAVPITYSALPS---ATYYVR*NKIISRHL*K 25
SP++S AA PIT A PS + YVR +++RH+ K
Sbjct: 139 SPHSSVAAPPITNFASPSLVKSLNYVR--SLVARHIPK 174
>09_06_0308 -
22199389-22199451,22199604-22199924,22200178-22200423,
22202152-22203337,22203487-22203551,22204205-22204486,
22205005-22205106,22205587-22206105
Length = 927
Score = 25.8 bits (54), Expect = 8.0
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -2
Query: 295 TRNKQHVQQIXRFLRSVGRVSGRSKP*GSPRTSTATSSIHRPGLRLYTRL-STSCDISIR 119
T N HV I + G + + G TS ++I RPG +T + S + S
Sbjct: 450 TSNNDHVCYIDGVVCGDGTIVAYATSDGFKHTSQIEAAILRPGDTAWTTVESKGMNYSAL 509
Query: 118 FSGCC 104
GCC
Sbjct: 510 GYGCC 514
>05_06_0093 -
25468271-25468320,25468393-25468433,25468592-25468653,
25468872-25469057
Length = 112
Score = 25.8 bits (54), Expect = 8.0
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -3
Query: 171 LDYVYTPGLVPPVISPYASPAAVPITYSA 85
+D +Y ++P V+ P+ S ++ +TY++
Sbjct: 1 MDPLYLSQIIPDVLDPFISTISLRVTYNS 29
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,669,573
Number of Sequences: 37544
Number of extensions: 131523
Number of successful extensions: 479
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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