Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P06
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81143-1|CAB03513.1|  381|Caenorhabditis elegans Hypothetical pr...    28   1.4  
U50069-1|AAB37559.2|  884|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z73910-5|CAI79219.1|  124|Caenorhabditis elegans Hypothetical pr...    26   5.6  
AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical ...    26   5.6  
U97000-11|AAC47993.1|  321|Caenorhabditis elegans Serpentine rec...    26   7.4  
U40411-1|AAC47063.2|  679|Caenorhabditis elegans Ubiquitin conju...    26   7.4  
AL034488-6|CAA22450.2|  467|Caenorhabditis elegans Hypothetical ...    26   7.4  
Z66561-7|CAB54206.2|  419|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF304127-1|AAG50240.1|  419|Caenorhabditis elegans innexin protein.    25   9.7  

>Z81143-1|CAB03513.1|  381|Caenorhabditis elegans Hypothetical
           protein ZK265.2 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 147 LVPPVISPYASPAAVPITYSALPSATYYVR*NKIISRHL 31
           + PP +  Y SPA V   + A P+A  Y R  K+   H+
Sbjct: 343 VAPPKLHDYESPAPVADAHDAAPAAQPYKR-RKVARAHM 380


>U50069-1|AAB37559.2|  884|Caenorhabditis elegans Hypothetical
           protein C09B9.3 protein.
          Length = 884

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 272 TNXSFSSLCWPCLWPLQALRQPQNQHRNFF 183
           T+ S+ S C P  W +Q LR  Q +  NFF
Sbjct: 171 TDLSYDSSCVPIRWAIQVLRH-QYRSGNFF 199


>Z73910-5|CAI79219.1|  124|Caenorhabditis elegans Hypothetical
           protein M117.6 protein.
          Length = 124

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 196 CWFWGCLRAWSGQRHGQQSEENEXFVGHVV 285
           C FW C     G +  +++E++E   GH +
Sbjct: 85  CGFWRCFLPTGGSKMLERTEKDEPGKGHTI 114


>AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical
           protein C30F12.3 protein.
          Length = 264

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 214 LRAWSGQRHGQQSEENE 264
           +R WSG RH +QS ++E
Sbjct: 4   IRKWSGSRHNRQSLQSE 20


>U97000-11|AAC47993.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 33 protein.
          Length = 321

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 105 VPITYSALPSATYY 64
           VP TY+ LPS TYY
Sbjct: 144 VPFTYTILPSWTYY 157


>U40411-1|AAC47063.2|  679|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein17 protein.
          Length = 679

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 177 TGLDYVYTPGLVPPVISPYASPA 109
           T      TPGLVP ++ PY S A
Sbjct: 253 TAASMAATPGLVPFLVRPYTSSA 275


>AL034488-6|CAA22450.2|  467|Caenorhabditis elegans Hypothetical
           protein Y54G11A.7 protein.
          Length = 467

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 233 RDTANRAKKTXNLLDMLFVSS 295
           R+ ANR  KT +LLDM+  SS
Sbjct: 277 REIANRFNKTNSLLDMVDASS 297


>Z66561-7|CAB54206.2|  419|Caenorhabditis elegans Hypothetical
           protein F08G12.10 protein.
          Length = 419

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 199 WFWGCLRAWSGQRHGQQSEENEXFVGHVVCFE*VQVLNHQ 318
           +FWG    W+ +  G   +E+  F   V+C   V+ L  Q
Sbjct: 213 YFWGFFHLWNVEFKGTAEKEDSIFPRIVLCDFKVRNLGQQ 252


>AF304127-1|AAG50240.1|  419|Caenorhabditis elegans innexin protein.
          Length = 419

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 199 WFWGCLRAWSGQRHGQQSEENEXFVGHVVCFE*VQVLNHQ 318
           +FWG    W+ +  G   +E+  F   V+C   V+ L  Q
Sbjct: 213 YFWGFFHLWNVEFKGTAEKEDSIFPRIVLCDFKVRNLGQQ 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,480,254
Number of Sequences: 27780
Number of extensions: 108153
Number of successful extensions: 343
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)