Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P04
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    27   1.4  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   2.4  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.3  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    24   7.4  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            24   9.8  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    24   9.8  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    24   9.8  

>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 261 AKKGVVAFVKDFYYDPFKWSLVKSVGFFTVGVVIASECTG 142
           A  G+V  + D+ +   KWS +        G+V A+ C G
Sbjct: 280 AVAGLVWVIYDYIFRTRKWSTIGFCSGVVAGLVAATPCAG 319


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = -1

Query: 333 SSGIIELSQV-IVSKKQLPLFELIMAKKGVVAFVKDFYYDPFKWSLVKSVGF-FTVGVVI 160
           SS +IE+ +   +S  Q  L+E  +        + DFY  P  WS    +       V +
Sbjct: 126 SSLVIEVEENGHLSNMQGSLYETPLRILDAPGLLDDFYISPLAWSTNGELAVALAQNVYL 185

Query: 159 ASECTGLEIMPAMP 118
            SE +G  IM   P
Sbjct: 186 WSEISGPSIMELSP 199


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 39  LFTKNIKNKYCNIVLYLKNNINK 107
           +F + ++NKY  I  Y  N +NK
Sbjct: 305 VFLQELQNKYSEIKTYSSNKLNK 327


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 267 IMAKKGVVAFVK-DFYYDPFKWSLVKSVGFFTVGVVIASEC 148
           IM K+GV+  V+ +    PF W + +  G+ T   ++  EC
Sbjct: 104 IMHKRGVICKVQYNGPGCPFIWEVEEMAGYATACELLTMEC 144


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 311 DNSIIPEESENFKCNFRFDL 370
           DN +   + ENFKC   FDL
Sbjct: 246 DNHVFVWDLENFKCLDAFDL 265


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 294 KKQLPLFELIMAKKGV-VAFVKDFYY-DPFKWSLVKSV 187
           ++ +PL+ L+  ++ V V F  D  Y DP+ W L  S+
Sbjct: 431 RENIPLWPLLHPQRFVDVVFAIDSTYNDPYGWPLGSSI 468


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 294 KKQLPLFELIMAKKGV-VAFVKDFYY-DPFKWSLVKSV 187
           ++ +PL+ L+  ++ V V F  D  Y DP+ W L  S+
Sbjct: 431 RENIPLWPLLHPQRFVDVVFAIDSTYNDPYGWPLGSSI 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,483,189
Number of Sequences: 5004
Number of extensions: 26383
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)