Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P04
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    27   0.078
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    20   9.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    20   9.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    20   9.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.0  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 27.1 bits (57), Expect = 0.078
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -1

Query: 312 SQVIVSKKQLPLF----ELIMAKKGVVAFVKDFY 223
           S+ +V  K +P F    +LI+ KK    FVKD Y
Sbjct: 31  SRGVVGPKPVPFFGTTKDLILVKKSTAHFVKDIY 64


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 51  NIKNKYCNIVLYLKNNINKI 110
           N K  YCN    L  NIN I
Sbjct: 95  NYKKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 51  NIKNKYCNIVLYLKNNINKI 110
           N K  YCN    L  NIN I
Sbjct: 95  NYKKLYCNNYKKLYYNINYI 114


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 51  NIKNKYCNIVLYLKNNINKI 110
           N K  YCN    L  NIN I
Sbjct: 95  NYKKLYCNNYRKLYYNINYI 114


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 161 ITTPTVKNPTLF 196
           I +P + NPTLF
Sbjct: 23  IASPQLNNPTLF 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,739
Number of Sequences: 438
Number of extensions: 1975
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)