Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P02
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   4.3  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.7  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    24   7.6  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    24   7.6  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    24   7.6  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    24   10.0 

>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 186 KSSPDEAFVCRDCKRFDSMTKIEYNLGSYSNV 281
           K+ PD+A+ C +CK      +++      SNV
Sbjct: 297 KNLPDDAWYCNECKHHSLYNELDEQEELESNV 328


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 199 TKPSFAETVSALIR*PKLNI 258
           TKPSF ETV A    P+L I
Sbjct: 165 TKPSFGETVQAPPELPELKI 184


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/48 (20%), Positives = 30/48 (62%)
 Frame = +3

Query: 18  ITVHLSQKICFKHTKI*LAHNKYVKVS*SYPSCRVFLPFSESS*LVNK 161
           +++++ +++C  H  I L  ++ +++  ++ +C V+LP +++  L  K
Sbjct: 152 LSIYVGRRLCELHNFILLHPHEVLEMPAAWKNCLVWLPKAKAKILGRK 199


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -3

Query: 392 LPMEKKRTVLLKEMITVYPDDFGGEDDYPRQNLKVRGHVRVRSKI-IFNFGHRIKALTVS 216
           LP  +     +K  ++V PD +   D   + + + R  V   SK+ ++   +RI  L  +
Sbjct: 689 LPCVESSDKSIKASVSVLPDIYEDSDAMSKASKETRSEVLECSKVRVYIVQNRIYKLEEA 748

Query: 215 ANEGFVRAALQQ 180
             +G  +  +Q+
Sbjct: 749 LRQGESKMTVQR 760


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 234 QSAYSLGKRRLRQGCSST 181
           + AY  GKR +R GC+ T
Sbjct: 151 EKAYEKGKRLIRAGCAFT 168


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 180 LLKSSPDEAF--VCRDCKRFDSMTKIEYNLGSY 272
           +LKS   E +  VC DCKR +      +NLG +
Sbjct: 15  VLKSLLREPYNKVCADCKRNEQPRWASWNLGVF 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,502,524
Number of Sequences: 5004
Number of extensions: 26182
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)