Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P02
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical pr...    32   0.13 
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    29   1.2  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    29   1.2  
U53155-9|AAC48273.1|  328|Caenorhabditis elegans Seven tm recept...    29   1.2  
Z70267-3|CAA94214.1|  534|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z75952-1|CAB00092.1|  148|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical
           protein F33G12.3 protein.
          Length = 403

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 26/95 (27%), Positives = 43/95 (45%)
 Frame = -3

Query: 389 PMEKKRTVLLKEMITVYPDDFGGEDDYPRQNLKVRGHVRVRSKIIFNFGHRIKALTVSAN 210
           P EKKR   L + I    D    E     +   ++G   + +K +F+     K  TV+AN
Sbjct: 310 PTEKKRFEELSKTIERVQDQPSDEIGRVVKLRNIKGITSI-TKRVFSCAEVTKTTTVTAN 368

Query: 209 EGFVRAALQQGVTYAAFVHESRALTEGKEDSARRI 105
           + F+  +  + + +       R LTE KE +A+ I
Sbjct: 369 QKFLTHSRAKHIYFDVIEIPPRPLTEQKEATAKVI 403


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 398 NELPMEKKRTVLLKEMITVYPDDFGGEDDYPRQNLKVRGHV 276
           +E+  +K     LKE I+   DD     DY  QNL V+ H+
Sbjct: 263 DEIEADKGNEASLKEEISRIRDDIRKAKDYLEQNLHVKQHM 303


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 398 NELPMEKKRTVLLKEMITVYPDDFGGEDDYPRQNLKVRGHV 276
           +E+  +K     LKE I+   DD     DY  QNL V+ H+
Sbjct: 263 DEIEADKGNEASLKEEISRIRDDIRKAKDYLEQNLHVKQHM 303


>U53155-9|AAC48273.1|  328|Caenorhabditis elegans Seven tm receptor
           protein 138 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 103 LYDTLTYLLCAS*IFVCLKQI-FCDK*TVIKK 11
           ++D ++YL+C+  IF+C   I FC    ++K+
Sbjct: 194 IFDAISYLICSLIIFICFSTICFCTSQIMMKQ 225


>Z70267-3|CAA94214.1|  534|Caenorhabditis elegans Hypothetical
           protein K04C1.2b protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 251 NFGHRIKALTVSANEGFVRAALQQGVTYAAFVHESRALTEGKEDSARRIT 102
           NFG  I A  VS   G   ++ Q   + A  VH +  + +G  D + R T
Sbjct: 29  NFGKPIFATFVSKGTGNPGSSDQPSTSSAGNVHRNSTINQGANDGSERNT 78


>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 19  SQFIYH-RKSVSNIQKFNLHIINTLKYHKVILLAESSFPSVR 141
           S FI+H  +   ++  F L IIN+LKYH  I  A  S   +R
Sbjct: 106 SIFIFHILQQTIHLLLFLLAIINSLKYHLPIHFAFKSQDFIR 147


>Z75952-1|CAB00092.1|  148|Caenorhabditis elegans Hypothetical
          protein F29D10.1 protein.
          Length = 148

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 95 YFNVFIMCKLNFCMFETDF 39
          +F +F++CK+ F +F   F
Sbjct: 7  HFEIFVLCKITFTLFRITF 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,191,596
Number of Sequences: 27780
Number of extensions: 144730
Number of successful extensions: 540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)