Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_P02
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   6.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.1  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    20   9.1  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 245 GHRIKALTVSANEGFVRAALQQGVTY 168
           G+   ALT    +GF R ++ +   Y
Sbjct: 196 GYHYNALTCEGCKGFFRRSITKNAVY 221


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 179 GVTYAAFVHESRALTEGKEDSARRIT 102
           G+   + + E   LTE K+D+ R+++
Sbjct: 416 GIVQISNMTEYNGLTEPKKDNKRKLS 441


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 157 FTSQELSLKGRK 122
           F SQELS +GR+
Sbjct: 639 FASQELSREGRR 650


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 157 FTSQELSLKGRK 122
           F SQELS +GR+
Sbjct: 607 FASQELSREGRR 618


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 221 VSANEGFVRAALQQGVTY 168
           V  ++GF R ++QQ + Y
Sbjct: 35  VGDSQGFFRRSIQQKIQY 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,845
Number of Sequences: 438
Number of extensions: 1771
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)