Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_O24
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 293 1e-80
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 293 1e-80
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 293 1e-80
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 42 1e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.34
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 7.2
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 293 bits (720), Expect = 1e-80
Identities = 134/188 (71%), Positives = 161/188 (85%)
Frame = -1
Query: 766 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 587
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 586 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 407
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 406 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 227
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179
Query: 226 KAGRAYHK 203
KAGRA+HK
Sbjct: 180 KAGRAFHK 187
Score = 52.4 bits (120), Expect = 7e-08
Identities = 19/31 (61%), Positives = 27/31 (87%)
Frame = -3
Query: 152 SPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 60
+PV+HPHGGGNHQH+G ++TV R ++ G+KV
Sbjct: 204 NPVDHPHGGGNHQHVGHSTTVPRQSAPGQKV 234
Score = 35.5 bits (78), Expect = 0.009
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -2
Query: 198 KVKRNCWPYVRGVAMKP 148
+VKRNCWP RGVAM P
Sbjct: 189 RVKRNCWPRTRGVAMNP 205
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 293 bits (720), Expect = 1e-80
Identities = 134/188 (71%), Positives = 161/188 (85%)
Frame = -1
Query: 766 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 587
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 586 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 407
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 406 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 227
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179
Query: 226 KAGRAYHK 203
KAGRA+HK
Sbjct: 180 KAGRAFHK 187
Score = 52.4 bits (120), Expect = 7e-08
Identities = 19/31 (61%), Positives = 27/31 (87%)
Frame = -3
Query: 152 SPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 60
+PV+HPHGGGNHQH+G ++TV R ++ G+KV
Sbjct: 204 NPVDHPHGGGNHQHVGHSTTVPRQSAPGQKV 234
Score = 35.5 bits (78), Expect = 0.009
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -2
Query: 198 KVKRNCWPYVRGVAMKP 148
+VKRNCWP RGVAM P
Sbjct: 189 RVKRNCWPRTRGVAMNP 205
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 293 bits (720), Expect = 1e-80
Identities = 134/188 (71%), Positives = 161/188 (85%)
Frame = -1
Query: 766 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 587
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 586 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 407
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 406 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 227
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179
Query: 226 KAGRAYHK 203
KAGRA+HK
Sbjct: 180 KAGRAFHK 187
Score = 52.4 bits (120), Expect = 7e-08
Identities = 19/31 (61%), Positives = 27/31 (87%)
Frame = -3
Query: 152 SPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 60
+PV+HPHGGGNHQH+G ++TV R ++ G+KV
Sbjct: 204 NPVDHPHGGGNHQHVGHSTTVPRQSAPGQKV 234
Score = 35.5 bits (78), Expect = 0.009
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -2
Query: 198 KVKRNCWPYVRGVAMKP 148
+VKRNCWP RGVAM P
Sbjct: 189 RVKRNCWPRTRGVAMNP 205
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/90 (26%), Positives = 48/90 (53%)
Frame = -1
Query: 481 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 302
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 301 KVLPSSNRGMVGIVAGGGRIDKPILKAGRA 212
+ + ++ +G+V+ + + KAGR+
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS 249
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 152 SPVEHPHGGGNHQHIG 105
+P +HPHGGG + IG
Sbjct: 264 NPCDHPHGGGGGKSIG 279
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.34
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 255 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 425
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 396 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 494
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,745
Number of Sequences: 5004
Number of extensions: 74089
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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