Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_O23
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   0.59 
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   5.5  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   7.3  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   9.6  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   9.6  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 438  YWAELSEAYWIIE*ISFVQNIPRLNIRCSSFCVP 337
            +W  LS  YWI++   F+     LN RC  +  P
Sbjct: 2320 HWESLSNTYWIVQLNIFLSRCFDLNQRCQFYKKP 2353


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 469 GTARIVEIPSLGSVTVMPGVSVTLYLPSFMTNGHWSCTDDTVSVT 603
           GT  +V IP+ G+VT        LY  +F  NG  S T + V  T
Sbjct: 223 GTVEVV-IPTAGTVTETAVSGSELYTSTFPANGTTSGTVEVVIPT 266



 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 469 GTARIVEIPSLGSVTVMPGVSVTLYLPSFMTNGHWSCTDDTVSVT 603
           GT  +V IP+ G+VT        LY  +F  NG  S T + V  T
Sbjct: 363 GTVEVV-IPTAGTVTETEISGSELYTSTFPANGTTSGTVEVVIPT 406


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = +2

Query: 209 AFTIGFNVVNPLIHFRKPVWDFXTRKKRSLFDYHQFYEFHTKNGTQKLEHLILSLGIFCT 388
           AF    N   P    R P +    R  RSLF    F  FHT    ++   L + L +FC 
Sbjct: 429 AFLFSPNASQPHFQPRAPTFGIP-RNVRSLFTL-PF--FHTIRNIERHFRLFIRLALFCV 484

Query: 389 KLIYSM 406
              Y++
Sbjct: 485 LTTYNV 490


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 559 TNGHWSCTDDT 591
           TNG WS TDDT
Sbjct: 275 TNGSWSSTDDT 285


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 620 HIQAT--SVTLTVSSVHDQWPLVMNDGRYNVTLTPGMTVTLPK 498
           HIQA+  S TLT +S  +Q PL+      N  + PG   +L K
Sbjct: 268 HIQASNQSRTLTTASPPEQIPLMEPQVYVNPQVLPGRLSSLSK 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,290
Number of Sequences: 5004
Number of extensions: 52716
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)