Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_O23
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0271 - 13694669-13694770,13694859-13694999,13695258-136953...    30   1.9  
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758...    29   4.3  
01_01_0356 - 2814175-2815401                                           25   6.7  

>04_03_0271 -
           13694669-13694770,13694859-13694999,13695258-13695370,
           13696253-13696304,13696538-13696660,13696985-13697091,
           13697280-13697329,13698284-13698387,13698610-13698690,
           13698829-13698913,13699370-13699446,13700587-13700676,
           13701338-13701397,13701768-13701872,13701986-13702035,
           13702174-13702280,13704735-13704805,13704916-13705144,
           13705228-13705704,13705807-13706405
          Length = 940

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 361 NIKSWYILHKANLLYDPIGLR*FCPIISAGSLQSFHGTARIVEIPSLGSVTVMPGVSVTL 540
           N  SW  + KA  L + IGL+ F P+   G   +  G+  +VE+   G +  M  +  ++
Sbjct: 587 NNPSWIAIEKATNLGEKIGLKHFKPVKPLGCGDT--GSVHLVELQGSGELFAMKAMDKSV 644

Query: 541 YL 546
            L
Sbjct: 645 ML 646


>08_01_0783 +
           7585326-7585477,7586420-7586589,7586687-7586801,
           7586887-7587055,7587185-7587319,7587409-7587728,
           7587992-7588127,7588224-7588472,7588567-7588787,
           7588906-7589164,7589264-7589971,7590095-7590424
          Length = 987

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 185 PSTLEISLAFT-IGFNVVNPLIHFRKPVWDFXTRKKRSLFDYHQFYEFHTKNGTQKLEHL 361
           P T  ISLAF+   F  +N     + P ++F +  K SLFDY +     T   + KL   
Sbjct: 784 PLTYFISLAFSPTAFIGLNS--DLKVPKFEFLSNTKPSLFDYPKPTTQQTTTASVKLPTA 841

Query: 362 ILS 370
           ILS
Sbjct: 842 ILS 844


>01_01_0356 - 2814175-2815401
          Length = 408

 Score = 25.0 bits (52), Expect(2) = 6.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 568 HWSCTDDTVSVT 603
           HW CTDD  S T
Sbjct: 227 HWLCTDDVASAT 238



 Score = 21.4 bits (43), Expect(2) = 6.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 508 VTVMPGVSVTLYLPSFMTNGHWS 576
           VT     S+T+Y+ S+   G W+
Sbjct: 176 VTTKHANSITMYVNSYSAAGGWA 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,531,542
Number of Sequences: 37544
Number of extensions: 301800
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)