Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_O23
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.64 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 615  PGDQRHADGVVGTRPVAVSHERREIQRDAHSWHDSDT 505
            PG Q++  GV   RP    H R   + +  +   SDT
Sbjct: 930  PGSQQNVAGVFNLRPATTYHLRIVAENEIGASDPSDT 966


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 636 IESVDAYPGDQRHADGVVG 580
           I S D  PG Q H  GV G
Sbjct: 528 IRSTDVIPGTQEHVCGVKG 546


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 110  LEFNLALKGRIRK*SKY-Y*AFCSIAPSTLEISLAFTIGFNVVNPLIHFRKPVWDFXTRK 286
            L F+  ++GR+   + + +  F S   S L +     I  +V  P  + +  +W     +
Sbjct: 970  LTFSKNVQGRVGFVTPFEHRHFISGIDSNLHVYAPLKISLDVNTPKGNMQWKIWPMKGEE 1029

Query: 287  KRSLFDY 307
            K  LF Y
Sbjct: 1030 KSRLFHY 1036


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 605 SVTLTVSSVHDQWPLVMNDGRYNVTLTPGMTVTLPKDGI 489
           SVT  VS  HD   +    GR        +T+TLP  G+
Sbjct: 344 SVTNWVSGNHDNHRVASRFGRQRGDEIVMLTLTLPGIGV 382


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 TRI*SSVKRTD*KIVKILLGILQHRSFNFRNISSFYN 219
           TR+   V   + K+  ILL +  H    F NI S  N
Sbjct: 235 TRVIPQVCSGNCKLNDILLTVRPHLELTFENILSHIN 271


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 TRI*SSVKRTD*KIVKILLGILQHRSFNFRNISSFYN 219
           TR+   V   + K+  ILL +  H    F NI S  N
Sbjct: 235 TRVIPQVCSGNCKLNDILLTVRPHLELTFENILSHIN 271


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 544 LPSFMTNGHW 573
           LP+F ++GHW
Sbjct: 232 LPNFPSSGHW 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,141
Number of Sequences: 438
Number of extensions: 3437
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)