Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_O20
(360 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 28 1.7
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 28 1.7
U64833-10|AAB04821.2| 427|Caenorhabditis elegans Hypothetical p... 28 1.7
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 1.7
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 27 3.0
Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 27 3.9
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr... 27 5.2
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr... 27 5.2
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 27 5.2
U40419-1|AAA81422.1| 283|Caenorhabditis elegans Hypothetical pr... 27 5.2
AL132949-10|CAB61082.1| 721|Caenorhabditis elegans Hypothetical... 27 5.2
Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical p... 26 6.9
Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical pr... 26 6.9
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 26 6.9
Z68337-7|CAA92742.1| 220|Caenorhabditis elegans Hypothetical pr... 26 9.1
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ... 26 9.1
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ... 26 9.1
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +1
Query: 88 RSCRRPECPEWTSRRWKAHEAS*NGGFQLSY 180
R C R CP W W S +GG ++ +
Sbjct: 1069 RECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +1
Query: 88 RSCRRPECPEWTSRRWKAHEAS*NGGFQLSY 180
R C R CP W W S +GG ++ +
Sbjct: 1069 RECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099
>U64833-10|AAB04821.2| 427|Caenorhabditis elegans Hypothetical
protein B0507.2 protein.
Length = 427
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 222 WSTTMTCSTARKCSVRELKTSISACLMCLPSSGGPFR 112
W T S A K VRE + CL CL +GG F+
Sbjct: 131 WLTKHAASMAGKDEVRE--SDAKECLQCLRQAGGMFQ 165
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 266 HDHRSGE*QHNDLQLHHGKWH*TTHRPA 349
H+H + +H HHG+ H T H PA
Sbjct: 390 HEHAAHHDEHGVHHRHHGEHHGTHHSPA 417
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 271 IVECGHTFVGTSVNRPLVYHHDVQYSSKMFRKR 173
++E G V V + + Y +++ + KMFRK+
Sbjct: 2287 VIEIGRLMVEEDVRKWMEYQYEMTFVKKMFRKK 2319
>Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical
protein F39B2.1 protein.
Length = 564
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 250 FVGTSVNRPLVYHHDVQYSSK 188
F + +NR VYH DV YS K
Sbjct: 423 FTESELNRHAVYHSDVMYSCK 443
>Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical
protein F53B6.2b protein.
Length = 711
Score = 27.1 bits (57), Expect = 3.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +1
Query: 88 RSCRRPECPEWTSRRW 135
R C R +CP W + +W
Sbjct: 531 RPCHREDCPRWEASQW 546
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 27.1 bits (57), Expect = 3.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +1
Query: 88 RSCRRPECPEWTSRRW 135
R C R +CP W + +W
Sbjct: 865 RPCHREDCPRWEASQW 880
>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
protein C37C3.6c protein.
Length = 1487
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 88 RSCRRPECPEWTSRRWKAHEAS*NGGFQ 171
++C R CPEW + W A FQ
Sbjct: 455 QTCNRFACPEWQAGPWSACSEKCGDAFQ 482
>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
protein C37C3.6a protein.
Length = 1558
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 88 RSCRRPECPEWTSRRWKAHEAS*NGGFQ 171
++C R CPEW + W A FQ
Sbjct: 455 QTCNRFACPEWQAGPWSACSEKCGDAFQ 482
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
protein C37C3.6b protein.
Length = 2167
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 88 RSCRRPECPEWTSRRWKAHEAS*NGGFQ 171
++C R CPEW + W A FQ
Sbjct: 455 QTCNRFACPEWQAGPWSACSEKCGDAFQ 482
>U40419-1|AAA81422.1| 283|Caenorhabditis elegans Hypothetical
protein C27F2.4 protein.
Length = 283
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 271 IVECGHTFVGTSVNRPLV 218
I++ GH FVG V+RP++
Sbjct: 71 ILDAGHMFVGVDVSRPML 88
>AL132949-10|CAB61082.1| 721|Caenorhabditis elegans Hypothetical
protein Y53F4B.12 protein.
Length = 721
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 168 KTSISACLMCLPSSGGPFRAFWPSTRPIAPL 76
K +S C +C SGG +F P+TR IA L
Sbjct: 307 KYMLSVCSVCA-LSGGVLASFLPATRVIAAL 336
>Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 125 PEDGRHMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAFHDHRSG 283
P++ + + + E +L+ H + + D G + +GAD F D RSG
Sbjct: 372 PDNIKQWKLPKGEFMQNLSGHNAIINTLSSNDDGVVVSGADNGSLCFWDWRSG 424
>Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 125 PEDGRHMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAFHDHRSG 283
P++ + + + E +L+ H + + D G + +GAD F D RSG
Sbjct: 372 PDNIKQWKLPKGEFMQNLSGHNAIINTLSSNDDGVVVSGADNGSLCFWDWRSG 424
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 208 DVQYSSKMFRKRVENLHFSLPHVPSIFGRSIQGILAFDKTYSTASANI 65
D+Q ++M +V S P F G +AFDK YS A+A +
Sbjct: 634 DLQKVTQMAYSQVVKFGMSEKVGPLSFETPAPGEMAFDKPYSEATAQL 681
>Z68337-7|CAA92742.1| 220|Caenorhabditis elegans Hypothetical
protein M7.10 protein.
Length = 220
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 169 ENLHFSLPHVPSIFGRSIQGILAFDKTYSTASANITQ 59
E HFS P P I S++ + FD + S + Q
Sbjct: 43 EGPHFSRPLPPFIANLSMEAKIEFDSVFKNKSLTLAQ 79
>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
protein C36B7.5b protein.
Length = 1148
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -1
Query: 267 WNAVTLSSAPASIGPWSTTMTCSTARKCSVRELKTSISACLMCLP 133
W+ +L +A +G C T R C ++ + AC LP
Sbjct: 354 WSPWSLCTATCGVGEIQRNRVCQTGRNCDGPSVE--VEACKALLP 396
>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
protein C36B7.5a protein.
Length = 1121
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -1
Query: 267 WNAVTLSSAPASIGPWSTTMTCSTARKCSVRELKTSISACLMCLP 133
W+ +L +A +G C T R C ++ + AC LP
Sbjct: 354 WSPWSLCTATCGVGEIQRNRVCQTGRNCDGPSVE--VEACKALLP 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,606,361
Number of Sequences: 27780
Number of extensions: 177346
Number of successful extensions: 483
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -