Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_O19
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    33   0.028
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   4.2  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   7.3  
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   9.7  

>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 33.5 bits (73), Expect = 0.028
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = -3

Query: 600 KKLKKILNFIMMYLPC-----IKAXNMLSSFLKSIKNCSYXPISGVSLNIGKLNCVYRII 436
           K+++ +       +PC     +K   +L SFL   K  +Y  +  + +  G+   +Y+++
Sbjct: 213 KEIRNLKRVAAAGIPCPEPILLKQHVLLMSFLGDKKGWAYPKLKDIDMTPGEATKLYQLV 272

Query: 435 CMKYFILFHCCIL 397
                ILFH C L
Sbjct: 273 ARNMRILFHVCHL 285


>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 438  LYDKHNSIFRYLVIHLISVXKNNS*LILRTKTACXV 545
            L+  H S+FR+L+ HL  V K+    ++ +K    V
Sbjct: 895  LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKNVSTV 930


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 238 YFVFGFHYFC*IVSDYVSNIIYAVFLVFFFYVSEH 134
           YF+FGF +FC  +    + I+ ++  V+F   SE+
Sbjct: 518 YFMFGFSFFCFGIL-VTTCIMVSIITVYFQLCSEN 551


>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 259 ILHYI*TYFVFGFHYFC*IVSD--YVSNIIYAVFLVFF 152
           I H I  +FVF F+YF  I+++  + S I Y+    +F
Sbjct: 7   IKHSIFQFFVFPFYYFLLIITEIGFSSCIQYSGLSAYF 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,696
Number of Sequences: 5004
Number of extensions: 38945
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)