Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_O19
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical pr...    29   3.9  

>U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical
           protein B0563.6b protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
 Frame = -3

Query: 567 MYLPCIKAXNMLSS-FLKSIKNCSYXPISGVSLNIGKLNCVYRIICMKYFILFHCCILFW 391
           MYL  +   ++L   F+    +  Y   +G S+N  KL  +Y+   M         ++ W
Sbjct: 51  MYLRALAVADLLCMLFVLVFVSTEYLAKNGSSINQYKLYQIYQCHLM-------LTLINW 103

Query: 390 VCGFFFF*IAQTTL--IVQLFYPVNYYCV*AKVR--HSIDLALITKILFYITYKLTLYSG 223
             G   + +   +L   + + +P+++    +  R   +I +A +   +FY+ Y +T Y G
Sbjct: 104 ALGAGVYVVVALSLERYISIVFPMHFRTWNSPQRATRAIVIAFLIPAIFYVPYAITRYKG 163


>U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical
           protein B0563.6a protein.
          Length = 434

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
 Frame = -3

Query: 567 MYLPCIKAXNMLSS-FLKSIKNCSYXPISGVSLNIGKLNCVYRIICMKYFILFHCCILFW 391
           MYL  +   ++L   F+    +  Y   +G S+N  KL  +Y+   M         ++ W
Sbjct: 60  MYLRALAVADLLCMLFVLVFVSTEYLAKNGSSINQYKLYQIYQCHLM-------LTLINW 112

Query: 390 VCGFFFF*IAQTTL--IVQLFYPVNYYCV*AKVR--HSIDLALITKILFYITYKLTLYSG 223
             G   + +   +L   + + +P+++    +  R   +I +A +   +FY+ Y +T Y G
Sbjct: 113 ALGAGVYVVVALSLERYISIVFPMHFRTWNSPQRATRAIVIAFLIPAIFYVPYAITRYKG 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,313,205
Number of Sequences: 27780
Number of extensions: 216950
Number of successful extensions: 493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)